View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4265_high_20 (Length: 244)
Name: NF4265_high_20
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 50384754 - 50384991
Alignment:
| Q |
1 |
tccaccttgggtagttttgacaataggtgctattctcaatttctttggttacttcatgatttggttatcagttaccnnnnnnntagcaagaccacaagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50384754 |
tccaccttgggtagttttgacaataggtgctattctcaatttctttggttacttcatgatttggttatcagttaccaaaaaaatagcaagaccacaagtt |
50384853 |
T |
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| Q |
101 |
tggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctgaatctcgcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50384854 |
tggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctgaatctcgcg |
50384953 |
T |
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| Q |
201 |
gcgcggttttgggaattcttaaaggctatgttggtctc |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
50384954 |
gcgcggttttgggaattcttaaaggctatgttggtctc |
50384991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 50393173 - 50393409
Alignment:
| Q |
1 |
tccaccttgggtagttttgacaataggtgctattctcaatttctttggttacttcatgatttggttatcagttaccnnnnnnntagcaagaccacaagtt |
100 |
Q |
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|||||||||||||||||| |||||||||||||| || || || ||||||||||| ||||||||||||||||| ||| ||||||||||| ||||| |
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| T |
50393173 |
tccaccttgggtagttttaacaataggtgctatactaaacttttttggttactttatgatttggttatcagtcaccaaaaaaatagcaagaccaaaagtt |
50393272 |
T |
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| Q |
101 |
tggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctgaatctcgcg |
200 |
Q |
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| T |
50393273 |
tggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctgaatctcgcg |
50393372 |
T |
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| Q |
201 |
gcgcggttttgggaattcttaaaggctatgttggtct |
237 |
Q |
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| T |
50393373 |
gagcggttttgggaattcttaaaggttatgttggtct |
50393409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 50389899 - 50390135
Alignment:
| Q |
1 |
tccaccttgggtagttttgacaataggtgctattctcaatttctttggttacttcatgatttggttatcagttaccnnnnnnntagcaagaccacaagtt |
100 |
Q |
| |
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|||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| | || | ||||||||||| ||| |
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| T |
50389899 |
tccaccttgggtagttttagcaataggtgctatacttaatttctttggttacttcatgatttggttatccataacaaaaaaaattgcaagaccacatgtt |
50389998 |
T |
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| Q |
101 |
tggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctgaatctcgcg |
200 |
Q |
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| T |
50389999 |
tggcaaatgtgtctttacatttgcataggtgctaattctcagtcttttgcaaacaccggttcacttgttacttgtgttaagaatttccccgaatctcgcg |
50390098 |
T |
|
| Q |
201 |
gcgcggttttgggaattcttaaaggctatgttggtct |
237 |
Q |
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| || |||||||||||||| ||||| ||| ||||||| |
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| T |
50390099 |
gagctgttttgggaattctaaaaggatatcttggtct |
50390135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 50406881 - 50407022
Alignment:
| Q |
96 |
aagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccctgaatc |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| | |
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| T |
50406881 |
aagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtctttttcaaacactggttcacttgttacttgtgttaagaatttccccgaaac |
50406980 |
T |
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| Q |
196 |
tcgcggcgcggttttgggaattcttaaaggctatgttggtct |
237 |
Q |
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||| || | || ||||| ||| | ||||| ||||||||||| |
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| T |
50406981 |
tcgtggtgttgtgttggggattttaaaaggttatgttggtct |
50407022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 41333949 - 41334043
Alignment:
| Q |
96 |
aagtttggcaaatgtgtctttacatttgtataggtgctaattctcagtcttttgcaaacactggttcacttgtgacttgtgttaagaatttccct |
190 |
Q |
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|||||||||||||||||||||| ||||| || ||||| |||||||| ||||| | ||||| ||| | | || ||||||||||||||||||||| |
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| T |
41333949 |
aagtttggcaaatgtgtctttatatttgcattggtgcaaattctcaaacttttactaacacaggtgctttagttacttgtgttaagaatttccct |
41334043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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