View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4265_high_4 (Length: 442)
Name: NF4265_high_4
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265_high_4 |
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| [»] scaffold0128 (1 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 48025578 - 48025985
Alignment:
| Q |
18 |
tttcaatcacagatggcaaaaaccagacgtttgttcaaattttgattttgacaacgctttgtactcatgttgcaaaacaatagcagtttgttcaaattat |
117 |
Q |
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| T |
48025578 |
tttcaatcacagatggcaaaaaccagacgtttgttcaaattttgattttgacaatgctttgtactcatgttgcaaaacaatagcagtttgttcaaattat |
48025677 |
T |
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| Q |
118 |
gctacactatagcgcccttctttgaccataccggcaaatcttaggtgaatgatatannnnnnnngaagaaaaatctcaggtgaatgatattaataaccat |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
48025678 |
gctacactatagcgcccttctttgacaataccggcaaatcttaggtgaatgatatattttttttgaagaaaattctcaggtgaatgatattaataaccat |
48025777 |
T |
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| Q |
218 |
tgtaaacattgttgctgcaatgc----ttttagacaaatagtttcagaatggaaagagacaagctcgttggttatttttcatgttatctt-tggtctgat |
312 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48025778 |
tgtaaacattgttgctgcaatgcataattttagacaaatagtttcagaatggaaagagacaagctcgttggttatttttcatgttatcttgtggtctgat |
48025877 |
T |
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| Q |
313 |
acttattctaaggacaccgtaaatgtcacatgtaagtagggagttcttaatctgatagtgtagaagaagagaattgtatttggcatggaaagataaatga |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
48025878 |
acttattctaaggacaccgtaaatgtcacatgtaagtagggagttcttaatctgatagtgtagaagaagaggattgtatttggcatggagagataaatga |
48025977 |
T |
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| Q |
413 |
tttgcgct |
420 |
Q |
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| T |
48025978 |
tttgcgct |
48025985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 5576915 - 5576957
Alignment:
| Q |
88 |
tgcaaaacaatagcagtttgttcaaattatgctacactatagc |
130 |
Q |
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| T |
5576915 |
tgcaaaacaatagcaacttgttcaaattctgctacactatagc |
5576957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 35196 - 35224
Alignment:
| Q |
93 |
aacaatagcagtttgttcaaattatgcta |
121 |
Q |
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| T |
35196 |
aacaatagcagtttgttcaaattatgcta |
35224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 3433 - 3469
Alignment:
| Q |
93 |
aacaatagcagtttgttcaaattatgctacactatag |
129 |
Q |
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| T |
3433 |
aacaatagcagtttgttaaaattatgctacattatag |
3469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 46109473 - 46109445
Alignment:
| Q |
87 |
ttgcaaaacaatagcagtttgttcaaatt |
115 |
Q |
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| T |
46109473 |
ttgcaaaacaatagcagtttgttcaaatt |
46109445 |
T |
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