View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4265_high_7 (Length: 393)
Name: NF4265_high_7
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 6 - 376
Target Start/End: Complemental strand, 354494 - 354124
Alignment:
| Q |
6 |
agcagcacagatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaa |
105 |
Q |
| |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
354494 |
agcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaa |
354395 |
T |
|
| Q |
106 |
tctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttccttgaccagacattacaaacaca |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
354394 |
tctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgctatgtcactttgcacctccctttccttgaccagacattacaaacaca |
354295 |
T |
|
| Q |
206 |
cacaatgactcaacactatttggacatgtttctatggagacaactgaaactcatcatttgttatgcgttgaagaatccataacactgctccagcaatgat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
354294 |
cacaatgactcaacactatttggacatgtttctatggagacaactgaaactcatcatttgttatgcattgaagaatccataacactgctccagcaatgat |
354195 |
T |
|
| Q |
306 |
cacaattatggagtaatagagggaaagaataaagctaattctctactttacagttacataatgtatgaatt |
376 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
354194 |
cacaattatggagtaatagagggaaagaataaagctaattctctactttacagttacataatgtatgaatt |
354124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 10580866 - 10580686
Alignment:
| Q |
16 |
atctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatc |
115 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10580866 |
atcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaa-ccactgatcctcttcacaccaactcttctcgccaatctacgaatc |
10580768 |
T |
|
| Q |
116 |
gctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttccttgaccagacatta |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| |
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| T |
10580767 |
gctggctttgttattccttgaatgttaccgcaaagaaccttgcaatatcactttgcacctccctttcattgaccagacatta |
10580686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 10575462 - 10575299
Alignment:
| Q |
20 |
cattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctg |
119 |
Q |
| |
|
|||||| |||||| ||||||||||| |||||| ||||||||||||| || |||||||| || |||||||| |||||||||||||||| ||||||||||| |
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| T |
10575462 |
cattctccaagaagatcttcaacacacctcttgtttcctcatagatcaat-ccactgattcttttcacacctcctcttctcgccaatcgacgaatcgctg |
10575364 |
T |
|
| Q |
120 |
gctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcct |
184 |
Q |
| |
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||||||| |||||||| ||||| | | |||||||||||||||| ||||||||| ||||||||| |
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| T |
10575363 |
gctttgtgattccttggatgttgtcacggagaaccttgcgatgtctctttgcacccccctttcct |
10575299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 10580662 - 10580612
Alignment:
| Q |
260 |
catttgttatgcgttgaagaatccataacactgctccagcaatgatcacaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||| |||| |
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| T |
10580662 |
catttgttatgcgttgaagaatccatgacactgctccaacaatgataacaa |
10580612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 21584704 - 21584867
Alignment:
| Q |
20 |
cattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctg |
119 |
Q |
| |
|
|||||| |||||||||||| | ||||||||| |||||||||| || ||| |||||||| ||||| |||||||||||||||||||||| ||||||||||| |
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| T |
21584704 |
cattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaa-ccactgattctcttaacaccacctcttctcgccaatcgacgaatcgctg |
21584802 |
T |
|
| Q |
120 |
gctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcct |
184 |
Q |
| |
|
|||| || ||||| ||||||||| | | |||||| || | |||| ||||||||||||||||||| |
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| T |
21584803 |
gcttggtgattccctgaatgttatcacgaagaactttcctgtgtctctttgcacctccctttcct |
21584867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 25085118 - 25084951
Alignment:
| Q |
15 |
gatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaat |
114 |
Q |
| |
|
|||| |||||| |||||| |||||||| || ||||| |||| ||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25085118 |
gatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaa-ccactgattctcttcacaccacctcttctcgccaatctacgaat |
25085020 |
T |
|
| Q |
115 |
cgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcc |
183 |
Q |
| |
|
|| ||||| || || || || |||||| | | ||||||||| | ||| | |||||||||||||||||| |
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|
| T |
25085019 |
ggcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctccctttcc |
25084951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 24923567 - 24923729
Alignment:
| Q |
20 |
cattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctg |
119 |
Q |
| |
|
|||||| |||||| |||||||| || ||||| |||| |||||||| ||| |||||||| ||||| |||||||||||||| ||||||| |||||| || | |
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| T |
24923567 |
cattctccaagaagatcttcaagacacctctggtttcttcatagatcaaa-ccactgattctcttaacaccacctcttcttgccaatcgacgaatagcag |
24923665 |
T |
|
| Q |
120 |
gctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcc |
183 |
Q |
| |
|
|||| || || || || |||||| | | ||||||||| | ||| | |||||||||||||||||| |
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|
| T |
24923666 |
gcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctccctttcc |
24923729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 31825664 - 31825766
Alignment:
| Q |
20 |
cattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctg |
119 |
Q |
| |
|
|||||| |||||| |||||||| || ||||| |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||| || | |
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| T |
31825664 |
cattctccaagaagatcttcaagacacctctagtttcttcatagatcaaa-ccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcag |
31825762 |
T |
|
| Q |
120 |
gctt |
123 |
Q |
| |
|
|||| |
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|
| T |
31825763 |
gctt |
31825766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 24982121 - 24981958
Alignment:
| Q |
20 |
cattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctg |
119 |
Q |
| |
|
|||||| |||||| |||||||| || ||||| |||| ||||| || ||| |||||||| ||||| |||||||||||||| ||||||| |||||| || | |
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|
| T |
24982121 |
cattctccaagaagatcttcaagacacctctggtttcttcatatatcaaa-ccactgattctcttaacaccacctcttcttgccaatcgacgaatagcag |
24982023 |
T |
|
| Q |
120 |
gctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcct |
184 |
Q |
| |
|
|||| || || || || |||||| | | |||||| || | ||| | ||||||||||||||||||| |
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|
| T |
24982022 |
gcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctccctttcct |
24981958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 24920001 - 24920155
Alignment:
| Q |
28 |
aagaaaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgtt |
127 |
Q |
| |
|
||||| |||||||| || ||||| |||| |||||||| ||| || ||||| |||||||||||||||||||| ||||||| |||||| || ||||| || |
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|
| T |
24920001 |
aagaagatcttcaagacacctctggtttcttcatagatcaaa-ccgctgattctcttcacaccacctcttcttgccaatcgacgaattgcaggcttggtg |
24920099 |
T |
|
| Q |
128 |
attccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcc |
183 |
Q |
| |
|
|| || || |||||| | | |||||| || | ||| | |||||||||||||||||| |
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|
| T |
24920100 |
ataccctggatgttatcacgaagaactttcctatgcctctttgcacctccctttcc |
24920155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 24497373 - 24497528
Alignment:
| Q |
27 |
caagaaaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgt |
126 |
Q |
| |
|
|||||| |||||||| || ||||| |||| |||||||| || |||||||| ||||| |||||||||||||| ||||||| |||||| || ||||| || |
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| T |
24497373 |
caagaagatcttcaagacacctctggtttcttcatagatcaat-ccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggt |
24497471 |
T |
|
| Q |
127 |
tattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcc |
183 |
Q |
| |
|
|| || || ||||| | | ||||||||| | ||| | |||||||||||||||||| |
|
|
| T |
24497472 |
gataccctggatgttgtcacgaagaaccttcctatgcctctttgcacctccctttcc |
24497528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 14261139 - 14261302
Alignment:
| Q |
20 |
cattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctg |
119 |
Q |
| |
|
|||||| |||||||||||||||||| || | |||| ||||| || || || ||||| ||||||||||| ||||||||||| |||| |||||||||| |
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| T |
14261139 |
cattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaac-ccgctgattctcttcacacctcctcttctcgctaatcgccgaatcgctg |
14261237 |
T |
|
| Q |
120 |
gctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcct |
184 |
Q |
| |
|
||||||| |||||||| ||||| | | ||| || |||||||||| ||||||||||||||||||| |
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|
| T |
14261238 |
gctttgtgattccttggatgttgtcacgaagcactttgcgatgtctctttgcacctccctttcct |
14261302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 22898540 - 22898466
Alignment:
| Q |
109 |
acgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcc |
183 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| | | ||| ||||| ||||||| |||||| || |||||||| |
|
|
| T |
22898540 |
acgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcc |
22898466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 22950208 - 22950134
Alignment:
| Q |
109 |
acgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgcgatgtcactttgcacctccctttcc |
183 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| | | ||| ||||| ||||||| |||||| || |||||||| |
|
|
| T |
22950208 |
acgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcc |
22950134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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