View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4265_high_8 (Length: 373)
Name: NF4265_high_8
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 51199170 - 51198822
Alignment:
| Q |
13 |
aaaatataaggaaataaagtgcatgtatttgggccaaattgtaaattctcagatagatgaagaatgtaaatttagatattataagctcgagtgaagaaaa |
112 |
Q |
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| T |
51199170 |
aaaatataaggaaaaaaagtgcatgtatttgggccagattgtaaattctcagatagatgaagaatgtaaatttagaaattataagctcgagtgaagaaaa |
51199071 |
T |
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| Q |
113 |
aggaacaaaaaacttacatggagccagtcaatacagcaaaaattatagtcacaacttcccctccggtatatcctttctctataaccatttttccaccaaa |
212 |
Q |
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| T |
51199070 |
-ggaacaaaaaacttacatggagccagtcaatacagcaaaaattatagtcacaacttcccctccggtatatcctttctctattaccatttttccaccaaa |
51198972 |
T |
|
| Q |
213 |
ccatactgctaaaccataactagcaataacaacaaagtagagtgaaccaaaccctaaaccagaagctagtgcctcttttactacagttttgtaagcatca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51198971 |
ccatactgctaaaccataactagcaataacaacaaagtagagtgaaccaaaccctaaaccagaagctagtgcctcttttactacagttttgtaagcatca |
51198872 |
T |
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| Q |
313 |
attaaggactgatcatatttagctatggcctgtttctctccagtgaacga |
362 |
Q |
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| T |
51198871 |
attaaggactgatcatatttagctatggcctgtttctctccggtgaacga |
51198822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 359
Target Start/End: Complemental strand, 51156280 - 51156026
Alignment:
| Q |
105 |
gaagaaaaaggaacaaaaaacttacatggagccagtcaatacagcaaaaattatagtcacaacttcccctccggtatatcctttctctataaccattttt |
204 |
Q |
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| T |
51156280 |
gaagaaaaaacaacacaaatcttacattgaaccagtcaatacagcaaaaattacagtcataacatccccacctgtatatcctttctctattatcaatttc |
51156181 |
T |
|
| Q |
205 |
ccaccaaaccatactgctaaaccataactagcaataacaacaaagtagagtgaaccaaaccctaaaccagaagctagtgcctcttttactacagttttgt |
304 |
Q |
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| T |
51156180 |
ccaccataccaaacagccaaaccataactggagataaaaacaaaaaagagtgcagcaaaccccacaccagatgctagtgcctcttgcactgaagtgttat |
51156081 |
T |
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| Q |
305 |
aagcatcaattaaggactgatcatatttagctatggcctgtttctctccagtgaa |
359 |
Q |
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| T |
51156080 |
aaaccttgattaaggactgattatatttagttatagcttgtttctccccagtgaa |
51156026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 362
Target Start/End: Complemental strand, 51145105 - 51144883
Alignment:
| Q |
140 |
tcaatacagcaaaaattatagtcacaacttcccctccggtatatcctttctctataaccatttttccaccaaaccatactgctaaaccataactagca-a |
238 |
Q |
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|||||||||||||||||| ||||| ||| |||||||| || ||||||||||| || | |||||| |||||||||||||| || ||||||||||| ||| | |
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| T |
51145105 |
tcaatacagcaaaaattacagtcataacgtcccctcctgtgtatcctttctcaattatcattttcccaccaaaccatacagccaaaccataact-gcaga |
51145007 |
T |
|
| Q |
239 |
taacaacaaagtagagtgaaccaaaccctaaaccagaagctagtgcctcttttactacagttttgtaagcatcaattaaggactgatcatatttagctat |
338 |
Q |
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||| |||||| |||||| ||||||||| | |||||| || |||||||||| ||| |||| ||||| | | |||||||| ||| ||| |||||| | |
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| T |
51145006 |
taaaaacaaaaaagagtgtaccaaacccaacaccagatgccagtgcctcttgcactgcagtcttgtagactttgattaaggatcgattataattagctgt |
51144907 |
T |
|
| Q |
339 |
ggcctgtttctctccagtgaacga |
362 |
Q |
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| T |
51144906 |
agcttgtttctccccggtgaacga |
51144883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 359
Target Start/End: Original strand, 29937828 - 29938062
Alignment:
| Q |
125 |
cttacatggagccagtcaatacagcaaaaattatagtcacaacttcccctccggtatatcctttctctataaccatttttccaccaaaccatactgctaa |
224 |
Q |
| |
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||||||| || |||||||||| ||||| | || ||||| ||| || ||||| ||||||||||||||||| | || ||| |||||||||||||| || || |
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| T |
29937828 |
cttacattgaaccagtcaatattgcaaatagtacagtcataacatcgcctcctgtatatcctttctctattatcaatttcccaccaaaccatacagccaa |
29937927 |
T |
|
| Q |
225 |
accataactagcaataacaacaaagtagagtgaaccaaaccctaaaccagaagctagtgcctcttttactacagttttgtaagcatcaattaaggactga |
324 |
Q |
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|| ||||| | |||| |||||| ||| || | ||||||| | |||||| ||||||||||||| ||| ||| |||||| | | |||||||| ||| |
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| T |
29937928 |
actgtaactggagataaaaacaaaaaagattgtagcaaaccccacaccagatgctagtgcctcttgcactgtagtattgtaaaccttgattaaggaatga |
29938027 |
T |
|
| Q |
325 |
tcatatttagctatggcctgtttctctccagtgaa |
359 |
Q |
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| |||||| | | | || |||||||| |||||||| |
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| T |
29938028 |
ttatattttgttgtagcttgtttctccccagtgaa |
29938062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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