View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4265_low_10 (Length: 352)
Name: NF4265_low_10
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 39693683 - 39694007
Alignment:
| Q |
18 |
atgtataaatcaaattaaccggataacatatactatattattaaatacacgttcctttggataaaaacaacaggataatataaccggnnnnnnnntatat |
117 |
Q |
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| T |
39693683 |
atgtataaatcaaattaaccggataacatatactatattattaaatacacgttcctttggataaaaacaacaggataatataaccgaaaaaaaa--atat |
39693780 |
T |
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| Q |
118 |
ataaacgcagaaataaattacaaattgag--tttttacgggaaaaaagataggaactcaatttgtactgaattttatccaaaatttagatatatacaaac |
215 |
Q |
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| T |
39693781 |
ataaacgcagaaataaattaaaatttgagagtttttacgggaaaaaagataggaactcaatttgtactgaattttatccaaaatttagatatatacaaaa |
39693880 |
T |
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| Q |
216 |
gaaagacatgttgtctggtattcttccgtgaagcagtcacatactcgcaagattaatgacgtaaaataagacaaacgaaacaaatgctagatatcagaat |
315 |
Q |
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| T |
39693881 |
gaaagacatgttgtctggtattcttccgtgaagcagtcacatactcacaagattaatgacgtaaaataagacaaacgaaacaaatgctagatatcagaat |
39693980 |
T |
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| Q |
316 |
aatgacaacaatcttcaccaagaataa |
342 |
Q |
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| T |
39693981 |
aatgacaacaatcttcaccaagaataa |
39694007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 252 - 322
Target Start/End: Original strand, 47713362 - 47713432
Alignment:
| Q |
252 |
tcacatactcgcaagattaatgacgtaaaataagacaaacgaaacaaatgctagatatcagaataatgaca |
322 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47713362 |
tcacatactcacaagattaatgacgtaaaataagacaaacgaaacaaatgctagatatcagaataatgaca |
47713432 |
T |
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