View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4265_low_11 (Length: 349)

Name: NF4265_low_11
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4265_low_11
NF4265_low_11
[»] chr8 (1 HSPs)
chr8 (1-111)||(42759989-42760099)
[»] chr5 (1 HSPs)
chr5 (1-113)||(1401747-1401859)
[»] scaffold0352 (2 HSPs)
scaffold0352 (118-247)||(16326-16463)
scaffold0352 (245-337)||(16487-16579)
[»] chr2 (2 HSPs)
chr2 (1-110)||(25890430-25890538)
chr2 (1-77)||(4814639-4814715)
[»] chr4 (1 HSPs)
chr4 (1-77)||(37341960-37342036)
[»] chr7 (2 HSPs)
chr7 (1-77)||(23487027-23487103)
chr7 (1-77)||(23485516-23485592)
[»] chr3 (2 HSPs)
chr3 (1-73)||(50717264-50717336)
chr3 (1-73)||(50795512-50795584)
[»] chr6 (1 HSPs)
chr6 (1-64)||(445562-445625)


Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 42759989 - 42760099
Alignment:
Q  1 ctttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaacttgatgcaaacctaataacttt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42759989 ctttggagccaaattattttagggctaacagattagcattaattgctgctaatttggctccaaatctttagggttaacttgatgcaaacctaataacttt 42760088  T
Q  101 aaggaataaga 111  Q
    |||||||||||    
T  42760089 aaggaataaga 42760099  T

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Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 1401859 - 1401747
Alignment:
Q  1 ctttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaacttgatgcaaacctaataacttt 100  Q
    ||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1401859 ctttggagccaaattattttaaggttaactcattagcattaattgctgctaatttggctccaaatctttagggttaacttgatgcaaacctaataacttt 1401760  T
Q  101 aaggaataagaga 113  Q
    |||||||||||||    
T  1401759 aaggaataagaga 1401747  T

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Target: scaffold0352 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 16326 - 16463
Alignment:
Q  118 attaggaaggcgtgataatagagtgaaaaagctgaaagggtgagcaaagaatttaaaggaacctgt--------gactacagttgcaggtgtattatttt 209  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||        ||||||||||||||||||||| ||||    
T  16326 attaggaaggcgtgagaatagagtgaaaaagatgaaagggtgagcaaaaaatttaaaggaacctgttttcaattgactacagttgcaggtgtattgtttt 16425  T
Q  210 tccttctcaagaaggattagagatctgctttgaataat 247  Q
    |||||||||||||||||| |||||||||||||||||||    
T  16426 tccttctcaagaaggatttgagatctgctttgaataat 16463  T

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Target: scaffold0352; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 245 - 337
Target Start/End: Original strand, 16487 - 16579
Alignment:
Q  245 aatcaaagcctcaccatcatgaatgagtacacgaaggagagggacgtgagattggaattaagagaaggaatgcagagaaagaatcagtgatga 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  16487 aatcaaagcctcaccatcatgaatgagtacacgaaggagagggacgtgagatcggaattaagagaaggaatgcagagaaagaattagtgatga 16579  T

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Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 25890430 - 25890538
Alignment:
Q  1 ctttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaacttgatgcaaacctaataacttt 100  Q
    ||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||  ||    
T  25890430 ctttgtagccaaatttttttagggttaacttattagcattaattgctgctaatttggctccaaatctttagggttaagttgttgc-aacctaataagatt 25890528  T
Q  101 aaggaataag 110  Q
    ||||| ||||    
T  25890529 aaggagtaag 25890538  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4814715 - 4814639
Alignment:
Q  1 ctttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 77  Q
    ||||||||||||||| ||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  4814715 ctttggagccaaatttttttagggttagcttattagcattaattgctgctaatttggctccaaatctttagggttaa 4814639  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 37341960 - 37342036
Alignment:
Q  1 ctttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 77  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  37341960 ctttgtagccaaattattttagggttaacttattagcattaattgctgctaatttggctccaaatctttagggttaa 37342036  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 23487103 - 23487027
Alignment:
Q  1 ctttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 77  Q
    ||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  23487103 ctttgaagccaaatttttttagggttaacttattagcattaattgctgctaatttggctccaaatttttagggttaa 23487027  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 23485592 - 23485516
Alignment:
Q  1 ctttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttagggttaa 77  Q
    ||||| ||||||||| |||||||||||||  ||||||||||||||||||||||| ||||| |||| |||||||||||    
T  23485592 ctttgaagccaaatttttttagggttaacttattagcattaattgctgctaattcggctcgaaatttttagggttaa 23485516  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 50717336 - 50717264
Alignment:
Q  1 ctttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttaggg 73  Q
    ||||| ||||||||| ||||| |||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  50717336 ctttgtagccaaatttttttaaggttaacttattagcattaattgctgctgatttggctccaaatctttaggg 50717264  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 50795512 - 50795584
Alignment:
Q  1 ctttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaatctttaggg 73  Q
    ||||| ||||||||| ||||| |||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  50795512 ctttgtagccaaatttttttaaggttaacttattagcattaattgctgctgatttggctccaaatctttaggg 50795584  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 445562 - 445625
Alignment:
Q  1 ctttggagccaaattattttagggttaacagattagcattaattgctgctaatttggctccaaa 64  Q
    ||||||||||||| | | |||||||||||   || |||||||||||||||||||||||||||||    
T  445562 ctttggagccaaaatttcttagggttaactcgttggcattaattgctgctaatttggctccaaa 445625  T

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