View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4265_low_12 (Length: 320)
Name: NF4265_low_12
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 51198627 - 51198325
Alignment:
| Q |
16 |
cgacaagacaagaagtggaatacaagacatcatgacaacagttaaaagccatcccttgatgaatgctatcacaaaacctccaaagaaagtagccattaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51198627 |
cgacaagacaagaagtggaatacaagacatcatgacaacagttaaaagccatcccttgatgaatgctatcacaaaacctccaaagaaagtagccattaac |
51198528 |
T |
|
| Q |
116 |
tgtataaactgtcccacctgaaatcaaaaggggaaaaaatagattttaggatttc------------aagcatgatatgaaaatgtnnnnnnncctaatc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
51198527 |
tgtataaactgtcccacctgaaatcaaaaggggaaaaaatagattttaggatttccaccactggatgaagcatgatatgaaaatgtaaaaaaacctaatc |
51198428 |
T |
|
| Q |
204 |
actgattcaggtcatcctacactttacaagccggatttgtaatgatgaattagtctcaataaaagaaaacctaatattggattcgagtctatcaccccag |
303 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51198427 |
actgattcaggtcatcctacaccttacaagccggatttgtaatgatgaattactctcaataaaagaaaacctaatattggattcgagtctatcaacccag |
51198328 |
T |
|
| Q |
304 |
acc |
306 |
Q |
| |
|
||| |
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|
| T |
51198327 |
acc |
51198325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 29938264 - 29938386
Alignment:
| Q |
17 |
gacaagacaagaagtggaatacaagacatcatgacaacagttaaaagccatcccttgatgaatgctatcacaaaacctccaaagaaagtagccattaact |
116 |
Q |
| |
|
||||| ||||||||||| |||| | | | |||||||||||||| |||||||||||| |||||||||| ||||||||||| | |||||| |||| |||| |
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|
| T |
29938264 |
gacaatacaagaagtggtatactaaatagcatgacaacagttagaagccatcccttagtgaatgctatgacaaaacctcctatgaaagttgccacaaact |
29938363 |
T |
|
| Q |
117 |
gtataaactgtcccacctgaaat |
139 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
29938364 |
gtataaactgtcccacctgaaat |
29938386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 51144683 - 51144560
Alignment:
| Q |
17 |
gacaagacaagaagtggaatacaagacatcatgacaacagttaaaagccatcccttgatgaatgctatcacaaaacctccaaagaaagtagccattaact |
116 |
Q |
| |
|
||||||| ||||||||| |||| ||| | |||||||||||||| ||||||||| || |||||||||| ||||||||||| | |||||| | ||| |||| |
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|
| T |
51144683 |
gacaagataagaagtggtatactagatagcatgacaacagttagaagccatccttttgtgaatgctatgacaaaacctcctatgaaagttgacataaact |
51144584 |
T |
|
| Q |
117 |
gtataaactgtcccacctgaaatc |
140 |
Q |
| |
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|||| ||||||||||||||||||| |
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|
| T |
51144583 |
gtatgaactgtcccacctgaaatc |
51144560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 51155822 - 51155700
Alignment:
| Q |
17 |
gacaagacaagaagtggaatacaagacatcatgacaacagttaaaagccatcccttgatgaatgctatcacaaaacctccaaagaaagtagccattaact |
116 |
Q |
| |
|
|||||||| | |||||| |||| ||| | |||||| ||||||| |||||||||||| |||||| ||| |||||| |||| | ||||| |||| |||| |
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|
| T |
51155822 |
gacaagactacaagtggtatactagatagcatgacgacagttagaagccatcccttagtgaatgatatgacaaaagctcctataaaagttgccacaaact |
51155723 |
T |
|
| Q |
117 |
gtataaactgtcccacctgaaat |
139 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
51155722 |
gtataaactgtcccacctgaaat |
51155700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 36285008 - 36284930
Alignment:
| Q |
56 |
gttaaaagccatcccttgatgaatgctatcacaaaacctccaaagaaagtagccattaactgtataaactgtcccacct |
134 |
Q |
| |
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|||| |||||||||||| | |||||||||||||| ||||||| |||||| |||| | ||||||| |||||||| |||| |
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| T |
36285008 |
gttagaagccatcccttaacaaatgctatcacaaagcctccaatgaaagttgccactgactgtatcaactgtcctacct |
36284930 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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