View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4265_low_13 (Length: 314)
Name: NF4265_low_13
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 40870398 - 40870700
Alignment:
| Q |
1 |
cacaggtatatgaaatcaaatgtcacaaatcatctaccaagatcacctaagtgaagggacatatatacataatcattaactcgaaaaataactcttgaaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870398 |
cacaggtatatgaaatcaaatgtctcaaatcatctaccaagttcacctaagtgaagggacatatatacataatcattaactcgaaaaataactcttgaaa |
40870497 |
T |
|
| Q |
101 |
tttcaagcatttcataatttgtcgcatgtgtacataaattttgttacaatattaatttctttcatctttgcactatatattactcttctcaattttagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40870498 |
tttcaagcatttcataatttgtcgcatgtgtacataaattttgttacaatattaatttctttcatctttgcactatgtattactcttctcaattttagat |
40870597 |
T |
|
| Q |
201 |
gagccaaatatgattctaaatttgttaattgcgttctaaactctcgatgaagtaccttgtcgcacacgtgttcctacttaatataatttgagaaattagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870598 |
gagccaaatatgattctaaatttgttaattgcgttctaaactcttgatgaagtaccttgtcgcacacgtgttcctacttaatataatttgagaaattagt |
40870697 |
T |
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| Q |
301 |
ctc |
303 |
Q |
| |
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||| |
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| T |
40870698 |
ctc |
40870700 |
T |
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