View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4265_low_15 (Length: 288)
Name: NF4265_low_15
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265_low_15 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 8136243 - 8135962
Alignment:
| Q |
1 |
tgtacatacccaatattctctgttactttttacttcacggttgaaggttaactttgtcattttatcatattttcggtgccaatttacataactacccagc |
100 |
Q |
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| T |
8136243 |
tgtacatacccaatattctccgtgactttttacttcacaatt-aaggttagctttgtcattttatcatattttcgttaccaatttacataactacccagc |
8136145 |
T |
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| Q |
101 |
ttctagnnnnnnnnnncctggtgtttcttttaacactattaagaatattatggtcgtttgcactcattagtttacatgatcaaaaacaactttgtattta |
200 |
Q |
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| T |
8136144 |
ttctagtttttttt--cctggtgttt-ttttaacattattaaggatattatgatcgtttgcactcattaattcacatgatcaaaaacaactttgtattta |
8136048 |
T |
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| Q |
201 |
ctttatgcaaaaatagtgacaacaactttttactttatatccaaccattttttctttatattgtcatttcattatgtccaacaattca |
288 |
Q |
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| T |
8136047 |
ctttctgcaaa--tagacacaacaactttttactttatatccaatcattttttctttatattgtcatttcattatgtccaacaattca |
8135962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 27 - 288
Target Start/End: Complemental strand, 8135884 - 8135625
Alignment:
| Q |
27 |
tttttacttcacggttgaaggttaactttgtcattttatcatattttcggtgccaattt-acataactacccagcttctagnnnnnnnnnncctggtgtt |
125 |
Q |
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| T |
8135884 |
tttttacttcacagttgaaggttaactttgtcattttatcatattttcggtgccaattttacataactacccagctttt--gctttttgttcttgctatt |
8135787 |
T |
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| Q |
126 |
tcttttaacactattaagaatattatggtcgtttgcactcattagtttacatgatcaaaaacaactttgtatttactttatgcaaaaatagtgacaacaa |
225 |
Q |
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| T |
8135786 |
t-tcttaacactattaaggatattatggttatttgcactcattagttcatattatcaaaaacaactttgtatttactttcatcaaaaacaaacacaagaa |
8135688 |
T |
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| Q |
226 |
ctttttactttatatccaaccattttttctttatattgtcatttcattatgtccaacaattca |
288 |
Q |
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| T |
8135687 |
ctttttactctatatccaaccatgttttctttatattgtcacttcattctgtccaacaattca |
8135625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 288
Target Start/End: Complemental strand, 8136534 - 8136290
Alignment:
| Q |
41 |
ttgaaggttaactttgtcattttatcatattttcggtgccaattt-acataactacccagcttctagnnnnnnnnnncctggtgtttcttttaacactat |
139 |
Q |
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| T |
8136534 |
ttgaaggttaactttgttattttatcatattttcggtgccaattttacataactaccgagcttgt--gttttttgttcatgttgttt-ttttaacactat |
8136438 |
T |
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| Q |
140 |
taagaatattatggtcgtttgcactcattagtttacatgatcaaaaacaactttgtatttactttatgcaaaaatagtgacaacaactttttactttata |
239 |
Q |
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| T |
8136437 |
taaggatattatggtcatttgcactcattggtgcacattatcaaaaacaactttatatttactttctgcaaaacaaac-acaacagcttttcactttata |
8136339 |
T |
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| Q |
240 |
tccaaccattttttctttatattgtcatttcattatgtccaacaattca |
288 |
Q |
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| T |
8136338 |
tcaaaccaagttttctttatattatcacttcgttctgtccaacaattca |
8136290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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