View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4265_low_18 (Length: 263)
Name: NF4265_low_18
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265_low_18 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 37 - 263
Target Start/End: Complemental strand, 2885992 - 2885766
Alignment:
| Q |
37 |
taggcacaatcgtttctaagtattagagatggcaatgggaattggggaaatattgtcacaattaggctcaattgcggctagccttatgtttgtttatgcc |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2885992 |
taggcacaatcgtttctaagtattagagatggcaatgggaattggggaaatattgtcacaattaggctcaattgcggctagccttatgtttgtttatgcc |
2885893 |
T |
|
| Q |
137 |
atgtatgagcaattctgcccatctgatcttcgtaagtttgttgaaaactacaaacacaaatttgcagatcttatgtccccttacatccaaataactttca |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2885892 |
atgtatgagcaattctgcccatctgatcttcgtaagtttgttgaaaactacaaacacaaatttacagatcttatgtccccttacatccaaataactttca |
2885793 |
T |
|
| Q |
237 |
atgaatcatcgggcgagcgtctcaaac |
263 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2885792 |
atgaatcatcgggcgagcgtctcaaac |
2885766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 37 - 263
Target Start/End: Complemental strand, 2866806 - 2866579
Alignment:
| Q |
37 |
taggcacaatcgtttctaagtattagagatggcaatgggaattggggaaatattgtcacaattaggctcaattgcggctagccttatgtttgtttatgcc |
136 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| |
|
|
| T |
2866806 |
taggcacaatagtttctaagtattagagatggcaatgggaattggggaaatattgtcacaattaggctcaattgccgctagcctaatgtttctttatgcc |
2866707 |
T |
|
| Q |
137 |
atgtatgagcaattctgcccatctgatcttcgtaagtttgttgaaaactacaaacacaaatttgcagatcttatgtcccctt-acatccaaataactttc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |||| ||||||||||||| || ||||||||||||| |
|
|
| T |
2866706 |
atgtatgagcaattctgcccatctgatcttcataagtttgttgaaaagcacatgaacaaatttacagaccttatgtccccttaacgtccaaataactttt |
2866607 |
T |
|
| Q |
236 |
aatgaatcatcgggcgagcgtctcaaac |
263 |
Q |
| |
|
|||||||||||| |||||||||||||| |
|
|
| T |
2866606 |
tatgaatcatcggacgagcgtctcaaac |
2866579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 85 - 263
Target Start/End: Complemental strand, 2861380 - 2861200
Alignment:
| Q |
85 |
aatattgtcacaattaggctcaattgcggctagccttatgttt--gtttatgccatgtatgagcaattctgcccatctgatcttcgtaagtttgttgaaa |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2861380 |
aatattgtcacaattaggctcaattgcggctagcctaatgtttttgtttatgccatgtatgagcaattctgcccatctgatcttcataagtttgttgaaa |
2861281 |
T |
|
| Q |
183 |
actacaaacacaaatttgcagatcttatgtccccttacatccaaataactttcaatgaatcatcgggcgagcgtctcaaac |
263 |
Q |
| |
|
| ||| |||||||| |||| ||||||||||||||| || |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2861280 |
agcacatgaacaaatttacagaccttatgtccccttacgtcgaaataactttttatgaatcatcgggcgagcgtctcaaac |
2861200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 2910744 - 2910642
Alignment:
| Q |
133 |
tgccatgtatgagcaattctgcccatctgatcttcgtaagtttgttgaaaactacaaacacaaatttgcagatcttatgtccccttacatccaaataact |
232 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||| |||||| ||| || | |||||||||| ||| |||||||||||| ||| |||||||| | |
|
|
| T |
2910744 |
tgccttgtatgagcaattctgcccttctgatcttcgtagatttgttcgaaaataaacgcacaaatttgtagaccttatgtcccctcacagccaaataagt |
2910645 |
T |
|
| Q |
233 |
ttc |
235 |
Q |
| |
|
||| |
|
|
| T |
2910644 |
ttc |
2910642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 2841525 - 2841611
Alignment:
| Q |
71 |
atgggaattggggaaatattgtcacaattaggctcaattgcggctagccttatgtttgtttatgccatgtatgagcaattctgccca |
157 |
Q |
| |
|
||||||||| ||||||||| |||| | |||||||||| ||||||| | |||||||| ||||||||||||||| |||||| |||| |
|
|
| T |
2841525 |
atgggaattagggaaatatggtcaaacctaggctcaataatggctagcataatgtttgtatatgccatgtatgagaaattcttccca |
2841611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University