View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4265_low_2 (Length: 554)
Name: NF4265_low_2
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 28 - 377
Target Start/End: Original strand, 48278812 - 48279165
Alignment:
| Q |
28 |
caaaggttgattgaaaaagacaaaataacttgcagaagaggaaaggaagacattatcgagtatgtatgaaaagtttaatatcgtttaaaatttg----tg |
123 |
Q |
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| T |
48278812 |
caaaggttgattgaaaaagacaaaatcacttgcagaagaggaaaggaggacattgtcaagtatgtatgaaaagtttaatatcgtttaaaatttgtttgtg |
48278911 |
T |
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| Q |
124 |
aataatgtttattgcacagaatttacttttaatgaatggcgtgtaacatatcggatgtatgttgatgtctgacacctacacatttgattatgttcaataa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48278912 |
aataatgtttattgcacagaatttacttttaatgaatggcgtgtaacatatcggatgtatgttgatgtctgacacctacacatttgattatgttcaataa |
48279011 |
T |
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| Q |
224 |
atttatttttgtgtcattattgtgtctggtatcgatgtatgtgtatgtgcttcataagtgtatactatgttttctattggggaacctaaaagcgcaacaa |
323 |
Q |
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| T |
48279012 |
atttatttatgtgtcattactgtgtctggtatcgatgtatgtgtatgtgcttcataagtgtagactatgttttctattgggaaacctaaaagcgcaacaa |
48279111 |
T |
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| Q |
324 |
tatgacaacccttcaccatgatcattcttttccatgcggaatggttagtgctcc |
377 |
Q |
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| T |
48279112 |
tatgacaacccttcatcatgatcattcttttccacgcggaacggttagtactcc |
48279165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 441 - 535
Target Start/End: Original strand, 48279229 - 48279322
Alignment:
| Q |
441 |
tgcattttctcttattagtctctgaattttttagagaattgttaatatatttttcgatggacatttatggttcccttcaccgtaagtgtgtttta |
535 |
Q |
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| T |
48279229 |
tgcattttttcttattagtctct-aattttttagagaattgttaacatatttttcgatggacatgtatggttcccttcaccgtaagtgtgtttta |
48279322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 13810560 - 13810516
Alignment:
| Q |
189 |
tgtctgacacctacacatttgattatgttcaataaatttattttt |
233 |
Q |
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| T |
13810560 |
tgtctgacaccgacacatgtgattacgttcaataaattcattttt |
13810516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 28 - 377
Target Start/End: Original strand, 40388319 - 40388666
Alignment:
| Q |
28 |
caaaggttgattgaaaaagacaaaataacttgcagaagaggaaaggaagacattatcgagtatgtatgaaaagtttaatatcgtttaaaatttgtgaata |
127 |
Q |
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| T |
40388319 |
caaaggttgattgaaaaagacaaaatcacttgcagaagaggaaaggaagacattgtcaagtatgtatgaaaagtttattatcgtttaaaatttgtgaata |
40388418 |
T |
|
| Q |
128 |
atgtttattgcacagaatttacttttaatgaatggcgtgtaacatatcggatgtatgttgatgtctgacacctacacatttgattatgttcaataaattt |
227 |
Q |
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| T |
40388419 |
atgtttattgcacagaatatatttttaatgaatggcgtgtaacatatcggatgtatgttgatgtctgacacctacacatttgattatgttcaataaattt |
40388518 |
T |
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| Q |
228 |
atttttgtgtcattattgtgtctggtatcgatgtatgtgtatgtgcttcataagtgtatactatgttttctattggggaacctaaaagcgcaacaatatg |
327 |
Q |
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| T |
40388519 |
a--tttgtgtcattattgtgtctcgtatctgtgtatatgtatgtgcttcataagtgtagactatgtttcctattggggaacctaaaagcgcaacaatatg |
40388616 |
T |
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| Q |
328 |
acaacccttcaccatgatcattcttttccatgcggaatggttagtgctcc |
377 |
Q |
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| T |
40388617 |
acaacccttcaccatgatcattcttttccacacggaacggttagtactcc |
40388666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 28 - 377
Target Start/End: Original strand, 29632734 - 29633077
Alignment:
| Q |
28 |
caaaggttgattgaaaaagacaaaataacttgcagaagaggaaaggaagacattatcgagtatgtatgaaaagtttaatatcgtttaaaatttgtgaata |
127 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||| |||||| |
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| T |
29632734 |
caaaggttgattgaaaaagacaaaatcacttgcagaagaggaaaggaa-------tcaagtatgtatgaaaagtttaatatcatttaaaatttatgaata |
29632826 |
T |
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| Q |
128 |
atgtttattgcacagaatttacttttaatgaatggcgtgtaacatatcggatgtatgttgatgtctgacacctacacatttgattatgttcaataaattt |
227 |
Q |
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| T |
29632827 |
atgtttattgcacagaatttacttttaatgaatggcgtgtaacatatatgatgtatgttgatgtctgacacctacacatttgattatgttcaataaattt |
29632926 |
T |
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| Q |
228 |
atttttgtgtcattattgtgtctggtatcgatgtatgtgtatgtgc-ttcataagtgtatactatgttttctattggggaacctaaaagcgcaacaatat |
326 |
Q |
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|||| |||||||||||||||| |||||||| ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
29632927 |
atttatgtgtcattattgtgtatggtatcggtgtatgtgtatgtgctttcataagtgtagactatgttttctgttggggaacctaaaagcgcaacaatat |
29633026 |
T |
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| Q |
327 |
gacaacccttcaccatgatcattcttttccatgcggaatggttagtgctcc |
377 |
Q |
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| T |
29633027 |
gacaacccttcaccatgatcattcttttccacgcggaacggttagtactcc |
29633077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 441 - 535
Target Start/End: Original strand, 29633141 - 29633235
Alignment:
| Q |
441 |
tgcattttctcttattagtctctgaattttttagagaattgttaatatatttttcgatggacatttatggttcccttcaccgtaagtgtgtttta |
535 |
Q |
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| T |
29633141 |
tgcatttttgcttattagtctctgaattttttagagaattgttaacatatttttcgatggacatttatggttcccttcaccgtaagtgtgtttta |
29633235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 441 - 535
Target Start/End: Original strand, 40388730 - 40388824
Alignment:
| Q |
441 |
tgcattttctcttattagtctctgaattttttagagaattgttaatatatttttcgatggacatttatggttcccttcaccgtaagtgtgtttta |
535 |
Q |
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| T |
40388730 |
tgcatttttgcttattagtctctgaattttttagagaatggttaacatatttttcgatggatatttatggttcccttcaccgtaagtgtgtttta |
40388824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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