View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4265_low_20 (Length: 250)
Name: NF4265_low_20
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 13590675 - 13590436
Alignment:
| Q |
1 |
ctgagaaaccaaatagtaacacactgaattcaaaagatcaaacagagttgaaatagtgatgaaacaattcaaaatttaaaaatgtttaccaaaatagaga |
100 |
Q |
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| T |
13590675 |
ctgagaaaccaaatagtaacacactgaattcaaaagatcaaacagagttgaaatagtgatgaaacaattcaaaatttaaaaatgtttaccaaaatagaga |
13590576 |
T |
|
| Q |
101 |
ttgcaaaatgactgacataaaatgaccttatcaattgagtagatatatagctcatgc---------------acttgtcaaagaagaattcttctgttgg |
185 |
Q |
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| T |
13590575 |
ttgcaaaatgactgacataaaatgagcttatcaattgagtagatatatagctcatgcactcagagaattggaacttgtcaaagaagaattcttctgttgg |
13590476 |
T |
|
| Q |
186 |
tgttttttctttgttttgttctttattatattcttgccag |
225 |
Q |
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| T |
13590475 |
tgttttttctttgttttgttctttattatattcttgccag |
13590436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 1344535 - 1344492
Alignment:
| Q |
46 |
agttgaaatagtgatgaaacaattcaaaatttaaaaatgtttac |
89 |
Q |
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| T |
1344535 |
agttgaaatagtgatgaagcaattcaaaatttaaaaatgcttac |
1344492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 1355027 - 1355070
Alignment:
| Q |
46 |
agttgaaatagtgatgaaacaattcaaaatttaaaaatgtttac |
89 |
Q |
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| T |
1355027 |
agttgaaatagtgatgaagcaattcaaaatttaaaaatgcttac |
1355070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 1350461 - 1350419
Alignment:
| Q |
167 |
agaagaattcttctgttggtgttttttctttgttttgttcttt |
209 |
Q |
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| T |
1350461 |
agaagaattcttctgttggtcttttttcttttttctgttcttt |
1350419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 1361125 - 1361083
Alignment:
| Q |
167 |
agaagaattcttctgttggtgttttttctttgttttgttcttt |
209 |
Q |
| |
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|
| T |
1361125 |
agaagaattcttctgttggtcttttttctttcttctgttcttt |
1361083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 1344019 - 1343974
Alignment:
| Q |
163 |
tcaaagaagaattcttctgttggtgttttttctttgttttgttctt |
208 |
Q |
| |
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|||||||||||||||||||||| | |||||||||| || ||||||| |
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|
| T |
1344019 |
tcaaagaagaattcttctgttgatcttttttctttcttctgttctt |
1343974 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 1355568 - 1355613
Alignment:
| Q |
163 |
tcaaagaagaattcttctgttggtgttttttctttgttttgttctt |
208 |
Q |
| |
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|||||||||||||||||||||| | |||||||||| || ||||||| |
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|
| T |
1355568 |
tcaaagaagaattcttctgttgatcttttttctttcttctgttctt |
1355613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 29052015 - 29052058
Alignment:
| Q |
46 |
agttgaaatagtgatgaaacaattcaaaatttaaaaatgtttac |
89 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
29052015 |
agttgaaatagtgatgaagcaattcaaaatttaaaaatgcttac |
29052058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 24618407 - 24618362
Alignment:
| Q |
163 |
tcaaagaagaattcttctgttggtgttttttctttgttttgttctt |
208 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| || ||||||| |
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|
| T |
24618407 |
tcaaagaagaattcttctgttggtcttttttctttcttctgttctt |
24618362 |
T |
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