View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4265_low_26 (Length: 236)
Name: NF4265_low_26
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13591035 - 13591256
Alignment:
| Q |
1 |
ctccgacccaaaatataagcaaaaatgaaccaaatacagtcacttatattttgggacggatggagtatatcattataaattgaatcagaatcagcaacaa |
100 |
Q |
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| T |
13591035 |
ctccgtcccaaaatataagcaaaaatgaaccatatacattcacttatattttgagacggatggagtatatcattataaattgaatcagaatcagcaacaa |
13591134 |
T |
|
| Q |
101 |
ttttttaataataaggtcctttacatttacagtcaagccacacacacaccgatgggagcaacattattaaaatttcttgaaggaagcctcgcaagttttc |
200 |
Q |
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| T |
13591135 |
ttttttaataatacggtcctttacatttacagtcaagccacacacacaccgatgggagcaactttattaaaatttcttgaaggaagcctcgcaagttttt |
13591234 |
T |
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| Q |
201 |
tttatggatcgaaagagtatag |
222 |
Q |
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| T |
13591235 |
tttatggatcgaaagagtatag |
13591256 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 1353640 - 1353714
Alignment:
| Q |
73 |
ttataaattgaatcagaatcagcaacaattttttaataataaggtcctttacatttacagtcaagccacacacac |
147 |
Q |
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| T |
1353640 |
ttataaattgaatcggtatcagaaacggttgtttaataataatgtcctttgcatttacattcaatccacgcacac |
1353714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 128
Target Start/End: Original strand, 1361783 - 1361817
Alignment:
| Q |
94 |
gcaacaattttttaataataaggtcctttacattt |
128 |
Q |
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| T |
1361783 |
gcaacatttttttaataataaggtcctttacattt |
1361817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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