View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4265_low_31 (Length: 228)

Name: NF4265_low_31
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4265_low_31
NF4265_low_31
[»] chr8 (20 HSPs)
chr8 (1-77)||(10902705-10902781)
chr8 (1-77)||(10692439-10692515)
chr8 (1-77)||(22719440-22719516)
chr8 (1-77)||(27325758-27325834)
chr8 (22-74)||(36660466-36660518)
chr8 (1-77)||(43397781-43397857)
chr8 (22-77)||(7271852-7271907)
chr8 (22-76)||(11253558-11253610)
chr8 (22-77)||(25987802-25987858)
chr8 (29-77)||(23754729-23754778)
chr8 (24-77)||(34694782-34694835)
chr8 (48-77)||(42733607-42733636)
chr8 (1-77)||(43285957-43286034)
chr8 (22-77)||(2730976-2731032)
chr8 (22-77)||(12655922-12655978)
chr8 (33-77)||(24479236-24479280)
chr8 (1-77)||(31249519-31249595)
chr8 (22-77)||(33100484-33100540)
chr8 (1-69)||(37133857-37133925)
chr8 (1-77)||(37449420-37449496)
[»] chr6 (9 HSPs)
chr6 (1-77)||(22079558-22079634)
chr6 (22-77)||(31077793-31077848)
chr6 (1-77)||(17551373-17551450)
chr6 (1-77)||(25811833-25811909)
chr6 (1-76)||(26595350-26595425)
chr6 (22-77)||(34047387-34047442)
chr6 (24-77)||(8098613-8098666)
chr6 (1-77)||(16337917-16337994)
chr6 (29-77)||(16368069-16368118)
[»] chr2 (15 HSPs)
chr2 (1-77)||(43487379-43487455)
chr2 (1-74)||(8848690-8848763)
chr2 (1-77)||(41042254-41042330)
chr2 (2-77)||(27490726-27490801)
chr2 (1-77)||(18254204-18254280)
chr2 (22-77)||(19916655-19916711)
chr2 (1-73)||(29349510-29349582)
chr2 (22-77)||(22888837-22888892)
chr2 (24-77)||(24766152-24766206)
chr2 (48-77)||(7438568-7438597)
chr2 (1-77)||(9760017-9760094)
chr2 (1-77)||(9207590-9207666)
chr2 (22-77)||(12784414-12784470)
chr2 (33-77)||(38874642-38874686)
chr2 (22-77)||(40210083-40210139)
[»] chr1 (15 HSPs)
chr1 (22-77)||(34157520-34157574)
chr1 (1-74)||(29359642-29359715)
chr1 (1-77)||(8350191-8350267)
chr1 (1-77)||(37685331-37685407)
chr1 (1-77)||(37700111-37700187)
chr1 (22-77)||(37619544-37619599)
chr1 (1-74)||(30735288-30735361)
chr1 (29-77)||(3159376-3159424)
chr1 (22-77)||(4213072-4213128)
chr1 (1-77)||(23645411-23645487)
chr1 (1-77)||(27465052-27465128)
chr1 (1-77)||(31088181-31088257)
chr1 (1-77)||(33100808-33100884)
chr1 (29-77)||(37275056-37275104)
chr1 (22-77)||(47642622-47642678)
[»] chr5 (14 HSPs)
chr5 (22-77)||(28306148-28306203)
chr5 (25-77)||(1274358-1274410)
chr5 (22-77)||(1981890-1981945)
chr5 (1-77)||(26791239-26791315)
chr5 (22-77)||(5721833-5721888)
chr5 (22-77)||(18258809-18258864)
chr5 (1-77)||(6940145-6940221)
chr5 (48-77)||(13332332-13332361)
chr5 (48-77)||(24468328-24468357)
chr5 (25-77)||(8686891-8686943)
chr5 (1-77)||(22649656-22649732)
chr5 (1-77)||(33037520-33037596)
chr5 (25-77)||(36563070-36563122)
chr5 (1-77)||(39054587-39054663)
[»] chr7 (8 HSPs)
chr7 (23-77)||(25192901-25192955)
chr7 (1-77)||(30941386-30941462)
chr7 (22-74)||(32529870-32529922)
chr7 (1-77)||(44189305-44189381)
chr7 (22-77)||(13152593-13152648)
chr7 (48-77)||(47391356-47391385)
chr7 (29-77)||(41189566-41189614)
chr7 (29-77)||(44895595-44895643)
[»] chr3 (20 HSPs)
chr3 (22-64)||(34064121-34064163)
chr3 (22-76)||(41308926-41308980)
chr3 (22-75)||(33939238-33939291)
chr3 (1-77)||(5114078-5114154)
chr3 (1-77)||(26014812-26014888)
chr3 (22-77)||(27168697-27168753)
chr3 (1-77)||(36671009-36671085)
chr3 (1-77)||(52326019-52326095)
chr3 (22-77)||(38671618-38671673)
chr3 (23-77)||(46623907-46623961)
chr3 (22-76)||(47472330-47472384)
chr3 (48-77)||(37453199-37453228)
chr3 (24-77)||(52939653-52939706)
chr3 (1-77)||(5244229-5244305)
chr3 (22-77)||(26550237-26550293)
chr3 (1-77)||(28539735-28539811)
chr3 (49-77)||(36639101-36639129)
chr3 (25-77)||(37503766-37503818)
chr3 (1-77)||(38926628-38926704)
chr3 (24-76)||(42357098-42357150)
[»] scaffold0098 (1 HSPs)
scaffold0098 (1-77)||(49295-49371)
[»] chr4 (17 HSPs)
chr4 (1-77)||(23369327-23369403)
chr4 (1-77)||(46212970-46213046)
chr4 (1-77)||(46634100-46634176)
chr4 (1-76)||(2268502-2268577)
chr4 (1-76)||(27354349-27354424)
chr4 (22-77)||(44539736-44539791)
chr4 (48-77)||(7146162-7146191)
chr4 (24-77)||(37997256-37997309)
chr4 (23-76)||(39731903-39731956)
chr4 (29-77)||(5622458-5622506)
chr4 (1-77)||(10250510-10250586)
chr4 (1-77)||(27051081-27051157)
chr4 (1-76)||(31641560-31641633)
chr4 (1-77)||(37297049-37297125)
chr4 (29-77)||(38134353-38134401)
chr4 (1-77)||(40348794-40348870)
chr4 (1-77)||(43174984-43175060)
[»] scaffold0519 (1 HSPs)
scaffold0519 (22-76)||(11784-11836)
[»] scaffold0056 (1 HSPs)
scaffold0056 (22-77)||(76635-76690)
[»] scaffold0003 (1 HSPs)
scaffold0003 (22-77)||(366294-366349)
[»] scaffold0020 (1 HSPs)
scaffold0020 (48-77)||(165473-165502)
[»] scaffold0432 (1 HSPs)
scaffold0432 (22-77)||(6535-6591)
[»] scaffold0110 (1 HSPs)
scaffold0110 (22-77)||(28342-28398)


Alignment Details
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 10902781 - 10902705
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||||||| ||||||| | |||||| |||||||||||||||  ||| |||||||||| |||||||||||||||||    
T  10902781 gtaaaaacataatgtgagtgtgagagagaaagttgttacaaaaattatcaaaaatggttattcaaatatcatttctc 10902705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 10692515 - 10692439
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   ||||||||||||||| ||||||  ||| ||||||| ||||||||||||||||||||    
T  10692515 gtaaaaagataatgtgagtatgagagataaagttgtcacaaaaattataaaaaatgattgttcaaatatcatttctc 10692439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 22719516 - 22719440
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || ||||||||  |||||| ||| |||| ||||||  | | ||||||||||||||||||||||||||||    
T  22719516 gtaaaaagataatgtgagcatgagagagaaaattgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 22719440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 27325834 - 27325758
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  27325834 gtaaaaagatcatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 27325758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 36660466 - 36660518
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcattt 74  Q
    |||||| |||||||||||||||  ||| ||||||||||||||| |||||||||    
T  36660466 gagagagaaagttgttacaaaaattataaaaaatggttgttcacatatcattt 36660518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43397857 - 43397781
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  43397857 gtaaaaaaataatgtgagtatgagagagaaagttgtaacaaaagttgtaaaaaatggttgttcaaatatcatttctc 43397781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 7271907 - 7271852
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||||||||||| ||||||  | ||||||||  ||||||||||||||||||||    
T  7271907 gagagataaagttgtcacaaaagttgttaaaaattattgttcaaatatcatttctc 7271852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 11253558 - 11253610
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttct 76  Q
    |||||| |||||||| ||||| ||||  |||||||||||||||||||||||||||    
T  11253558 gagagagaaagttgtcacaaattgta--aaaaatggttgttcaaatatcatttct 11253610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 25987802 - 25987858
Alignment:
Q  22 gagagataaagttgttacaaaa--tgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||||||||||| ||||||  ||||  ||||||||||||||||||||||||||||    
T  25987802 gagagataaagttgtcacaaaagttgtaa-aaaaatggttgttcaaatatcatttctc 25987858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 23754729 - 23754778
Alignment:
Q  29 aaagttgttacaaaatgtattaaaa-atggttgttcaaatatcatttctc 77  Q
    |||||||| ||||||  |||||||| ||||||||||||||||||||||||    
T  23754729 aaagttgtcacaaaagttattaaaaaatggttgttcaaatatcatttctc 23754778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 34694835 - 34694782
Alignment:
Q  24 gagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||||||||||||||||| | |  |||||||| || |||||||||||||||    
T  34694835 gagataaagttgttacaaaatttgtctaaaatggtcgtacaaatatcatttctc 34694782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 77
Target Start/End: Original strand, 42733607 - 42733636
Alignment:
Q  48 ttaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||||||||||||||||||||||||||    
T  42733607 ttaaaaatggttgttcaaatatcatttctc 42733636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 43285957 - 43286034
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtatta-aaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  ||||| ||||||||||| |||||||||||||||    
T  43285957 gtaaaaatataatgtgagtatgagagagaaagttgtcacaaaagttattagaaaatggttgtccaaatatcatttctc 43286034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 2730976 - 2731032
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaa-tggttgttcaaatatcatttctc 77  Q
    |||||| |||||||||||||||  | | ||||| |||||||||||||||||||||||    
T  2730976 gagagagaaagttgttacaaaagttgtcaaaaagtggttgttcaaatatcatttctc 2731032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 12655978 - 12655922
Alignment:
Q  22 gagagataaagttgttacaaaatgtatta-aaaatggttgttcaaatatcatttctc 77  Q
    |||||| |||||| ||||||||  ||||| ||||||||||| |||||||||||||||    
T  12655978 gagagaaaaagttattacaaaagttattataaaatggttgtacaaatatcatttctc 12655922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 24479280 - 24479236
Alignment:
Q  33 ttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||| ||||||  ||| ||||||||||||||||||||||||||||    
T  24479280 ttgtcacaaaagttatcaaaaatggttgttcaaatatcatttctc 24479236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 31249519 - 31249595
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| ||| |||| ||||||  | | ||||||||||||||||||||||||||||    
T  31249519 gtaaaaagataatgtgagtatgagagaaaaaattgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 31249595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 33100484 - 33100540
Alignment:
Q  22 gagagataaagttgttacaaaatgtatta-aaaatggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| ||||||  | ||| |||||||||||||||||||||||||||    
T  33100484 gagagagaaagttgtcacaaaagttgttataaaatggttgttcaaatatcatttctc 33100540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 37133857 - 37133925
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatat 69  Q
    |||||||||| || |||| | |||||| |||||||| ||||||  ||| ||||||||||||| ||||||    
T  37133857 gtaaaaacataatatgagtgtgagagaaaaagttgtcacaaaagttatcaaaaatggttgttgaaatat 37133925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 37449420 - 37449496
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | ||||||||||||| ||||||||||||||    
T  37449420 gtaaaaagataatgtgagtatgagagaaaaagttgtcacaaaagttgtaaaaaatggttgttgaaatatcatttctc 37449496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22079558 - 22079634
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||||||| ||||||| | |||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  22079558 gtaaaaacataatgtgagtgtgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 22079634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 31077848 - 31077793
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| ||||||| ||| ||||||| ||||||||||||||||||||    
T  31077848 gagagagaaagttgtcacaaaatttataaaaaatgattgttcaaatatcatttctc 31077793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 17551373 - 17551450
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtat-taaaaatggttgttcaaatatcatttctc 77  Q
    |||||||||| |||||||   |||||| |||||||||||||||  | |  ||||||||||||||||||||||||||||    
T  17551373 gtaaaaacataatgtgagtatgagagagaaagttgttacaaaagttgtcaaaaaatggttgttcaaatatcatttctc 17551450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25811833 - 25811909
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  25811833 gtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 25811909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 26595425 - 26595350
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttct 76  Q
    |||||||||| |||||||   |||||| ||| |||||| ||||  ||| |||||| ||||||||||||||||||||    
T  26595425 gtaaaaacataatgtgagtatgagagaaaaaattgttataaaagttatcaaaaatagttgttcaaatatcatttct 26595350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 34047442 - 34047387
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  34047442 gagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 34047387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 8098613 - 8098666
Alignment:
Q  24 gagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  8098613 gagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 8098666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16337917 - 16337994
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtatta-aaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||||||||||  ||||| ||||||||||| | |||||||||||||    
T  16337917 gtaaaaatataatgtgagtatgagagagaaagttgttacaaaagttattataaaatggttgtaccaatatcatttctc 16337994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 16368069 - 16368118
Alignment:
Q  29 aaagttgttacaaaatgtatta-aaaatggttgttcaaatatcatttctc 77  Q
    |||||||||||||||  ||||| ||||||||||| |||||||||||||||    
T  16368069 aaagttgttacaaaaattattataaaatggttgtacaaatatcatttctc 16368118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43487455 - 43487379
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || ||||||||  |||||| |||||||| ||||||  ||| ||||||||||||||||||||||||||||    
T  43487455 gtaaaaaaataatgtgagcatgagagagaaagttgtcacaaaaattataaaaaatggttgttcaaatatcatttctc 43487379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8848690 - 8848763
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcattt 74  Q
    |||||||||| ||||||| | |||||| |||||||| ||||||  | | |||||||||||||||||||||||||    
T  8848690 gtaaaaacatgatgtgagtgtgagagagaaagttgtcacaaaagttgtcaaaaatggttgttcaaatatcattt 8848763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 41042330 - 41042254
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | ||||||||||||||||||||||||||||||    
T  41042330 gtaaaaagataatgtgagtatgagagaaaaagttgtcacaaaagttgttaaaaatggttgttcaaatatcatttctc 41042254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 27490726 - 27490801
Alignment:
Q  2 taaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||||| || |||| | |||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  27490726 taaaaacataatatgagtgtgagagagaaagttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctc 27490801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 18254204 - 18254280
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  18254204 gtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 18254280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 19916711 - 19916655
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaa-tggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| ||||||  ||||||||| |||||||||||||||||||||||    
T  19916711 gagagagaaagttgtcacaaaaattattaaaaagtggttgttcaaatatcatttctc 19916655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 29349582 - 29349510
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatt 73  Q
    |||||||||| ||||||  | |||||| |||||||| ||||||   || ||||||||||||||||||||||||    
T  29349582 gtaaaaacataatgtgaatgtgagagagaaagttgtcacaaaagtgatcaaaaatggttgttcaaatatcatt 29349510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 22888837 - 22888892
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  22888837 gagagagaaagttgtcacaaaaattgtcaaaaatggttgttcaaatatcatttctc 22888892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 24766206 - 24766152
Alignment:
Q  24 gagataaagttgttacaaaatgtattaaaaa-tggttgttcaaatatcatttctc 77  Q
    ||||||||||||| ||||||  ||||||||| ||||||| |||||||||||||||    
T  24766206 gagataaagttgtcacaaaagttattaaaaaatggttgtacaaatatcatttctc 24766152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 7438597 - 7438568
Alignment:
Q  48 ttaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||||||||||||||||||||||||||    
T  7438597 ttaaaaatggttgttcaaatatcatttctc 7438568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9760094 - 9760017
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaa-tggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| |||||| ||  |||||| |||||||||||||||||||||||    
T  9760094 gtaaaaagataatgtgagtatgagagagaaagttgtcacaaaaagttgtaaaaaatggttgttcaaatatcatttctc 9760017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9207666 - 9207590
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | ||||||| ||||||||||||||||||||    
T  9207666 gtaaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatgattgttcaaatatcatttctc 9207590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 12784414 - 12784470
Alignment:
Q  22 gagagataaagttgttacaaaatgtatta-aaaatggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| ||||||  ||||| ||||||||||| |||||||||||||||    
T  12784414 gagagagaaagttgtcacaaaaattattataaaatggttgtacaaatatcatttctc 12784470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 38874642 - 38874686
Alignment:
Q  33 ttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||| ||||||  ||||||||||||||||| ||||||||||||||    
T  38874642 ttgtcacaaaagttattaaaaatggttgtttaaatatcatttctc 38874686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 40210083 - 40210139
Alignment:
Q  22 gagagataaagttgttacaaaatgtatt-aaaaatggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| ||||||  |||| |||||| |||||||||||||||||||||    
T  40210083 gagagagaaagttgtcacaaaaattatttaaaaatagttgttcaaatatcatttctc 40210139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 34157574 - 34157520
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||    
T  34157574 gagagataaagttgttaaaaaat-tattaaaaatggttgtacaaatatcatttctc 34157520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 29359715 - 29359642
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcattt 74  Q
    ||||||| || |||||||   |||||| |||||||||||||||  ||| ||||||| |||||||||||||||||    
T  29359715 gtaaaaagataatgtgagtatgagagagaaagttgttacaaaagttataaaaaatgattgttcaaatatcattt 29359642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 8350191 - 8350267
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  8350191 gtaaaaagatcatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 8350267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 37685407 - 37685331
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  37685407 gtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 37685331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 37700111 - 37700187
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  37700111 gtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 37700187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 37619599 - 37619544
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| ||||||  ||| |||||||||||| |||||||||||||||    
T  37619599 gagagagaaagttgtcacaaaagttatcaaaaatggttgtccaaatatcatttctc 37619544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 30735288 - 30735361
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcattt 74  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | |||||||||||||||||||||||||    
T  30735288 gtaaaaaaataatgtgagtatgagagaaaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 30735361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 3159424 - 3159376
Alignment:
Q  29 aaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  3159424 aaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 3159376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 4213128 - 4213072
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaa-tggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| ||||||  ||| ||||| |||||||||||||||||||||||    
T  4213128 gagagagaaagttgtcacaaaagttatcaaaaaatggttgttcaaatatcatttctc 4213072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 23645487 - 23645411
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   ||||||||||||||| | ||||  | | |||||||||||| |||||||||||||||    
T  23645487 gtaaaaagataatgtgagtatgagagataaagttgtcaaaaaagttgtaaaaaatggttgtccaaatatcatttctc 23645411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 27465052 - 27465128
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | ||||||||||||| ||||||||||||||    
T  27465052 gtaaaaagatcatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgtttaaatatcatttctc 27465128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31088257 - 31088181
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||| | ||||||  ||| |||||||||||||||||||| |||||||    
T  31088257 gtaaaaagataatgtgagtatgagagaaaaagttatcacaaaagttataaaaaatggttgttcaaatattatttctc 31088181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 33100884 - 33100808
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| | ||||  | | ||||||||||||||||||||||||||||    
T  33100884 gtaaaaagataatgtgagtatgagagagaaagttgtcaaaaaagttgtaaaaaatggttgttcaaatatcatttctc 33100808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 37275056 - 37275104
Alignment:
Q  29 aaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||| | ||||||  ||| ||||||||||||||||||||||||||||    
T  37275056 aaagttatcacaaaagttataaaaaatggttgttcaaatatcatttctc 37275104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 47642622 - 47642678
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaa-atggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| ||||||  ||| |||| ||||||||||||||||||||||||    
T  47642622 gagagagaaagttgtcacaaaagttatcaaaaaatggttgttcaaatatcatttctc 47642678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 28306148 - 28306203
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||||||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  28306148 gagagataaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 28306203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 1274410 - 1274358
Alignment:
Q  25 agataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  1274410 agataaagttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctc 1274358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 1981945 - 1981890
Alignment:
Q  22 gagagataaagttgttacaaaa-tgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| |||||| ||| ||||||||||||||||||||||||||||||    
T  1981945 gagagagaaagttgtcacaaaagtgt-ttaaaaatggttgttcaaatatcatttctc 1981890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 26791239 - 26791315
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || ||||||||  |||||| |||||||| ||||||  | | |||||||||||||||||||| |||||||    
T  26791239 gtaaaaagataatgtgagcatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatattatttctc 26791315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 5721833 - 5721888
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||||||||||| ||||||  | | |||||| |||||||||||||||||||||    
T  5721833 gagagataaagttgtcacaaaaattgtaaaaaatagttgttcaaatatcatttctc 5721888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 18258809 - 18258864
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| || |||  ||| ||||||||||||||||||||||||||||    
T  18258809 gagagagaaagttgtcactaaagttataaaaaatggttgttcaaatatcatttctc 18258864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6940145 - 6940221
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtatta-aaaatggttgttcaaatatcatttctc 77  Q
    |||||||||| |||||||   |||||| |||||||| ||||||  ||||| ||||||||||| |||||||||||||||    
T  6940145 gtaaaaacat-atgtgagtatgagagagaaagttgtcacaaaaattattataaaatggttgtacaaatatcatttctc 6940221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 13332361 - 13332332
Alignment:
Q  48 ttaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||||||||||||||||||||||||||    
T  13332361 ttaaaaatggttgttcaaatatcatttctc 13332332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 77
Target Start/End: Original strand, 24468328 - 24468357
Alignment:
Q  48 ttaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||||||||||||||||||||||||||    
T  24468328 ttaaaaatggttgttcaaatatcatttctc 24468357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 8686943 - 8686891
Alignment:
Q  25 agataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| |||| ||||||  ||| |||||||||||||||||| |||||||||    
T  8686943 agataaaattgtcacaaaaattatcaaaaatggttgttcaaatctcatttctc 8686891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22649656 - 22649732
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| ||| |||| ||||||  | | ||||||||||||||||||||||||||||    
T  22649656 gtaaaaagataatgtgagtatgagagagaaaattgtcacaaaaattgtaaaaaatggttgttcaaatatcatttctc 22649732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 33037596 - 33037520
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| | ||||  | | ||||||||||||||||||||||||||||    
T  33037596 gtaaaaagataatgtgagtatgagagagaaagttgtcataaaagttgtaaaaaatggttgttcaaatatcatttctc 33037520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 36563070 - 36563122
Alignment:
Q  25 agataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||| ||||||| ||||||  ||| ||||| ||||||||||||||||||||||    
T  36563070 agattaagttgtcacaaaaattatcaaaaaaggttgttcaaatatcatttctc 36563122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 39054663 - 39054587
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||||||| ||||||| | || ||| |||||||| | ||||  ||| ||||||  ||||||||||||||||||||    
T  39054663 gtaaaaacataatgtgagtgtgaaagagaaagttgtcaaaaaaattatcaaaaataattgttcaaatatcatttctc 39054587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 25192901 - 25192955
Alignment:
Q  23 agagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||| |||||||||||||||  | | ||||||||||||||||||||||||||||    
T  25192901 agagagaaagttgttacaaaagttgtaaaaaatggttgttcaaatatcatttctc 25192955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 30941462 - 30941386
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  30941462 gtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 30941386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 32529870 - 32529922
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcattt 74  Q
    |||||| |||||||||||||||  ||| |||||| ||||||||||||||||||    
T  32529870 gagagagaaagttgttacaaaagttataaaaaatagttgttcaaatatcattt 32529922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44189305 - 44189381
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||  ||||||  ||| ||||||||||||||||||||||||||||    
T  44189305 gtaaaaagataatgtgagtatgagagagaaagttgacacaaaagttataaaaaatggttgttcaaatatcatttctc 44189381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 13152648 - 13152593
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  13152648 gagagagaaagttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctc 13152593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 77
Target Start/End: Original strand, 47391356 - 47391385
Alignment:
Q  48 ttaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||||||||||||||||||||||||||    
T  47391356 ttaaaaatggttgttcaaatatcatttctc 47391385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 41189566 - 41189614
Alignment:
Q  29 aaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||||| ||||||  ||| ||||||||||||||| ||||||||||||    
T  41189566 aaagttgtcacaaaaattataaaaaatggttgttcatatatcatttctc 41189614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 44895595 - 44895643
Alignment:
Q  29 aaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  44895595 aaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 44895643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 34064121 - 34064163
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttca 64  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  34064121 gagagataaagttgttacaaaagttattaaaaatggttgttca 34064163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 41308980 - 41308926
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttct 76  Q
    |||||| |||||||| ||||||  ||| |||||||||||||||||||||||||||    
T  41308980 gagagagaaagttgtcacaaaagttataaaaaatggttgttcaaatatcatttct 41308926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 33939291 - 33939238
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttc 75  Q
    |||||| |||||||| ||||||  ||| ||||||||||||||||||||||||||    
T  33939291 gagagagaaagttgtcacaaaaattataaaaaatggttgttcaaatatcatttc 33939238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 5114154 - 5114078
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || ||||||| | |||||| |||||||| | ||||  | | ||||||||||||||||||||||||||||    
T  5114154 gtaaaaagataatgtgagtgtgagagagaaagttgtcaaaaaaattgtaaaaaatggttgttcaaatatcatttctc 5114078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 26014888 - 26014812
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  26014888 gtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 26014812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 27168697 - 27168753
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaa-atggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| ||||||  |||||||| ||||||||||||||||||||||||    
T  27168697 gagagagaaagttgtcacaaaaattattaaaaaatggttgttcaaatatcatttctc 27168753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36671009 - 36671085
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  36671009 gtaaaaagataatgtgagtatgagagaaaaagttgtcacaaaaattgtaaaaaatggttgttcaaatatcatttctc 36671085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 52326095 - 52326019
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || ||||||||  |||||| |||||||| ||||||  | | |||||||||| |||||||||||||||||    
T  52326095 gtaaaaagataatgtgagcatgagagagaaagttgtcacaaaagttgtaaaaaatggttattcaaatatcatttctc 52326019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 38671673 - 38671618
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||| ||| |||| ||||||  ||| ||||||||||||||||||||||||||||    
T  38671673 gagagagaaaattgtcacaaaaattataaaaaatggttgttcaaatatcatttctc 38671618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 46623961 - 46623907
Alignment:
Q  23 agagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  46623961 agagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 46623907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 47472384 - 47472330
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttct 76  Q
    |||||| |||||||| ||||||  | | |||||||||||||||||||||||||||    
T  47472384 gagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttct 47472330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 37453228 - 37453199
Alignment:
Q  48 ttaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||||||||||||||||||||||||||    
T  37453228 ttaaaaatggttgttcaaatatcatttctc 37453199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 52939706 - 52939653
Alignment:
Q  24 gagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  52939706 gagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 52939653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 5244305 - 5244229
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | ||| ||||||||||||||||||||||||    
T  5244305 gtaaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaatatggttgttcaaatatcatttctc 5244229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 26550293 - 26550237
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaa-tggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| ||||||  ||||||||| ||||||| |||||||||||||||    
T  26550293 gagagagaaagttgtcacaaaaattattaaaaaatggttgtgcaaatatcatttctc 26550237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 28539735 - 28539811
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||||||| || |||| | |||| | ||| |||| ||||||  ||| |||||| |||||||||||||||||||||    
T  28539735 gtaaaaacataatatgagtgtgagaaagaaaattgtcacaaaaattataaaaaatagttgttcaaatatcatttctc 28539811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 77
Target Start/End: Complemental strand, 36639129 - 36639101
Alignment:
Q  49 taaaaatggttgttcaaatatcatttctc 77  Q
    |||||||||||||||||||||||||||||    
T  36639129 taaaaatggttgttcaaatatcatttctc 36639101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 37503766 - 37503818
Alignment:
Q  25 agataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||||||||| ||||||  ||| ||||||| || |||||||||||||||||    
T  37503766 agataaagttgtcacaaaaattataaaaaatgattattcaaatatcatttctc 37503818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 38926704 - 38926628
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| |||||   | | ||||||||||||||||||||||||||||    
T  38926704 gtaaaaagataatgtgagtatgagagagaaagttgtcacaaacgttgtaaaaaatggttgttcaaatatcatttctc 38926628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 42357098 - 42357150
Alignment:
Q  24 gagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttct 76  Q
    |||| |||||||| ||||||  | | |||||||||||||||||||||||||||    
T  42357098 gagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttct 42357150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 49371 - 49295
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| | ||||  ||| ||||||||||||||||||||||||||||    
T  49371 gtaaaaagataatgtgagtatgagagagaaagttgtcataaaagttataaaaaatggttgttcaaatatcatttctc 49295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23369327 - 23369403
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  23369327 gtaaaaagataatgtgagtaagagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 23369403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 46213046 - 46212970
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  ||| |||||| |||||||||||||||||||||    
T  46213046 gtaaaaagataatgtgagtacgagagaaaaagttgtcacaaaaattataaaaaatagttgttcaaatatcatttctc 46212970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 46634176 - 46634100
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   ||||||||||||||| ||||||  | | ||||||| ||||||||||||||||||||    
T  46634176 gtaaaaagataatgtgagtatgagagataaagttgtcacaaaagttgtaaaaaatgattgttcaaatatcatttctc 46634100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 2268502 - 2268577
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttct 76  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | |||||||||| ||||||||||||||||||    
T  2268502 gtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgttaaaaatggatgttcaaatatcatttct 2268577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 27354349 - 27354424
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttct 76  Q
    |||||||||| |||||||   ||||||||||||| | | ||||  ||| ||||||| |||||||||||||||||||    
T  27354349 gtaaaaacataatgtgagtatgagagataaagttatcataaaagttatcaaaaatgattgttcaaatatcatttct 27354424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 44539791 - 44539736
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||| |||||| | ||||||  ||| ||||||||||||||||||||||||||||    
T  44539791 gagagagaaagttatcacaaaaattataaaaaatggttgttcaaatatcatttctc 44539736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 77
Target Start/End: Original strand, 7146162 - 7146191
Alignment:
Q  48 ttaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||||||||||||||||||||||||||    
T  7146162 ttaaaaatggttgttcaaatatcatttctc 7146191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 37997309 - 37997256
Alignment:
Q  24 gagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||| |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  37997309 gagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 37997256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 39731903 - 39731956
Alignment:
Q  23 agagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttct 76  Q
    ||||||| |||||| ||||||  ||| |||||||||||| ||||||||||||||    
T  39731903 agagatagagttgtcacaaaaattataaaaaatggttgtccaaatatcatttct 39731956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 5622506 - 5622458
Alignment:
Q  29 aaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  5622506 aaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 5622458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10250510 - 10250586
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||||| ||||||  | | |||||| |||||||||||||||||||||    
T  10250510 gtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatagttgttcaaatatcatttctc 10250586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 27051081 - 27051157
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||| | ||||||  ||| ||||||||||||| ||||||||||||||    
T  27051081 gtaaaaagataatgtgagtatgagagagaaagttatcacaaaaattataaaaaatggttgtttaaatatcatttctc 27051157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 31641560 - 31641633
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttct 76  Q
    ||||||| || ||||||| | |||||| |||||||| ||||||  ||  |||||| ||||||||||||||||||||    
T  31641560 gtaaaaatataatgtgagtgtgagagagaaagttgtcacaaaagtta--aaaaatagttgttcaaatatcatttct 31641633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 37297125 - 37297049
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| ||| |||| ||||||  | | ||||||||||||||||||||||||||||    
T  37297125 gtaaaaagataatgtgagtatgagagagaaaattgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 37297049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 38134401 - 38134353
Alignment:
Q  29 aaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||||| ||||||  | | ||||||||||||||||||||||||||||    
T  38134401 aaagttgtcacaaaaattgtaaaaaatggttgttcaaatatcatttctc 38134353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 40348870 - 40348794
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| ||| |||| ||||||  ||| ||||||| ||||||||||||||||||||    
T  40348870 gtaaaaagataatgtgagtatgagagagaaaattgtcacaaaaattataaaaaatgattgttcaaatatcatttctc 40348794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43175060 - 43174984
Alignment:
Q  1 gtaaaaacattatgtgagcgggagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||| || |||||||   |||||| |||||| | ||||||  | | ||||||||||||||||||||||||||||    
T  43175060 gtaaaaaaataatgtgagtatgagagagaaagttatcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 43174984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 11836 - 11784
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttct 76  Q
    |||||| |||||||| ||||| ||||  |||||||||||||||||||||||||||    
T  11836 gagagagaaagttgtcacaaattgta--aaaaatggttgttcaaatatcatttct 11784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 76635 - 76690
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| ||||||  ||| |||||| |||||||||||||||||||||    
T  76635 gagagagaaagttgtcacaaaaattataaaaaatagttgttcaaatatcatttctc 76690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 366349 - 366294
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaatggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| ||||||  | |||||||||||||| |||||||||||||||    
T  366349 gagagagaaagttgtcacaaaagttgttaaaaatggttgtacaaatatcatttctc 366294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 165502 - 165473
Alignment:
Q  48 ttaaaaatggttgttcaaatatcatttctc 77  Q
    ||||||||||||||||||||||||||||||    
T  165502 ttaaaaatggttgttcaaatatcatttctc 165473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 6535 - 6591
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaa-tggttgttcaaatatcatttctc 77  Q
    ||||||||||||||| ||||||  | ||||||| || ||||||||||||||||||||    
T  6535 gagagataaagttgtcacaaaagttgttaaaaaatgattgttcaaatatcatttctc 6591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 28342 - 28398
Alignment:
Q  22 gagagataaagttgttacaaaatgtattaaaaa-tggttgttcaaatatcatttctc 77  Q
    |||||| |||||||| ||||||  ||| ||||| |||||||||||||||||||||||    
T  28342 gagagagaaagttgtcacaaaagttatcaaaaagtggttgttcaaatatcatttctc 28398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University