View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4265_low_33 (Length: 219)
Name: NF4265_low_33
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 10012235 - 10012048
Alignment:
| Q |
14 |
aatatattataagtgatatgctacttatgaatatgaatgatatgaaacagaaaagtattcacagggaagcagaagcattagtgtttgaagtgaaggcata |
113 |
Q |
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| T |
10012235 |
aatatattataagtgatatgttacttatgaatatgaatgatatgaagcagaaaagtattcatagggaagcagaagcattagtgtttgaagtgaaggcata |
10012136 |
T |
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| Q |
114 |
tatggcttaacaagtggaaaaggaaagtggaatatgctttactactttcatgcaagtaatcctcagagacaaagaaataccactaagg |
201 |
Q |
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| T |
10012135 |
tatggcttaacaagtggaaaaggaaagtggaatatgctttactactttcatgcaagtaatcctcagagacaaagaaataccactaagg |
10012048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 42171531 - 42171416
Alignment:
| Q |
78 |
ggaagcagaagcattagtgtttgaagtgaaggcatatatggcttaacaagtggaaaaggaaagtggaatatgctttactactttcatgcaagtaatcctc |
177 |
Q |
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| T |
42171531 |
ggaagcataagcattagtgtttgaagtgaaggcatatatggcttgacatgtggaaaaggaaagtggaatatgctttactagtttcatgcaagtaatcttc |
42171432 |
T |
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| Q |
178 |
agagacaaagaaatac |
193 |
Q |
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| T |
42171431 |
agagacaaagaaatac |
42171416 |
T |
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