View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4265_low_35 (Length: 203)
Name: NF4265_low_35
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 44291999 - 44292170
Alignment:
| Q |
17 |
aacaagagggggagttctcaatattcatattgatgaacacaagcaaagagtgtttttgcgtgggaaggctattacagtgatggaagggtttgttctggtc |
116 |
Q |
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| T |
44291999 |
aacaagagggggagttctcaatattcatattgatgaacgcaagcaaagagtgtttttgcgtgggaaagctattacagtgatggaagggtttgttctggtc |
44292098 |
T |
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| Q |
117 |
taatcatatgttcatcacaagcaaaagtacatgcaataaatatatcaaatgctacagattataatttatttg |
188 |
Q |
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| T |
44292099 |
taatcatatgttcatcacaagcaaaagtatatgcaataaatatatcaaatgctacagattataatttatttg |
44292170 |
T |
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Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 32156395 - 32156298
Alignment:
| Q |
21 |
agagggggagttctcaatattcatattgatgaacacaagcaaagagtgtttttgcgtgggaaggctattacagtgatggaagggtttgttctggtcta |
118 |
Q |
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| T |
32156395 |
agagggggaattctcaatattcatattgatgaacaaaaacaaagagtgtttttgcgtgggaaggctgttacagtgatggaagggtgtgttttggtcta |
32156298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 32163707 - 32163613
Alignment:
| Q |
27 |
ggagttctcaatattcatattgatgaacacaagcaaagagtgtttttgcgtgggaaggctattacagtgatggaagggtttgttctggtctaatc |
121 |
Q |
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| T |
32163707 |
ggagttctcaatattcatattgatgaacagaaacaaagagtgtttttacgtgggaaggctattacagttatggaagggtgtgttttggtctaatc |
32163613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 32166761 - 32166664
Alignment:
| Q |
21 |
agagggggagttctcaatattcatattgatgaacacaagcaaagagtgtttttgcgtgggaaggctattacagtgatggaagggtttgttctggtcta |
118 |
Q |
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||||||||| ||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||||||||||||||| | |||| ||||||| |
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| T |
32166761 |
agagggggaattctcaatattcatattgatgaacaaaaacaaagagtttttttgcgtgggaaggctgttacagtgatggaaggatctgttttggtcta |
32166664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 27333941 - 27334038
Alignment:
| Q |
21 |
agagggggagttctcaatattcatattgatgaacacaagcaaagagtgtttttgcgtgggaaggctattacagtgatggaagggtttgttctggtcta |
118 |
Q |
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| T |
27333941 |
agaggaggagctatcaatattcatattgatgaacaaaatcaaagagtgtttattcgtggaaaggctattactgttatggaagggtgtgttctggtcta |
27334038 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 27362729 - 27362810
Alignment:
| Q |
37 |
atattcatattgatgaacacaagcaaagagtgtttttgcgtgggaaggctattacagtgatggaagggtttgttctggtcta |
118 |
Q |
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|
|||| ||| ||||||| || || ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
27362729 |
atatccatcttgatgagcaaaaacaaagagtgtttttgcgtgggaaggctattatagtgatggaagggtgtgttctggtcta |
27362810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 27319842 - 27319736
Alignment:
| Q |
17 |
aacaagagggggagttctcaatattcatattgatgaacacaagcaaagagtgtttttgcgtgggaaggctattacagtgatggaagggtttgttctggtc |
116 |
Q |
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||||||||| |||| ||| || |||||| ||||| |||| || ||||| ||||||||||||||||||| |||| ||||| ||||||| |||||||||| |
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| T |
27319842 |
aacaagaggaggagctctaaacattcatgttgataaacagaaacaaagggtgtttttgcgtgggaagggcgttacggtgattgaagggtatgttctggtc |
27319743 |
T |
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| Q |
117 |
taatcat |
123 |
Q |
| |
|
||||||| |
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| T |
27319742 |
taatcat |
27319736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 27276166 - 27276272
Alignment:
| Q |
17 |
aacaagagggggagttctcaatattcatattgatgaacacaagcaaagagtgtttttgcgtgggaaggctattacagtgatggaagggtttgttctggtc |
116 |
Q |
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||||||| | |||| ||| || |||||| ||||| |||| || ||||| |||||||| |||||||||| |||| ||||| ||||||| |||||||||| |
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| T |
27276166 |
aacaagaagaggagctctaaacattcatgttgataaacagaaacaaagggtgtttttacgtgggaagggcgttactgtgattgaagggtatgttctggtc |
27276265 |
T |
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| Q |
117 |
taatcat |
123 |
Q |
| |
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||||||| |
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| T |
27276266 |
taatcat |
27276272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 27336536 - 27336454
Alignment:
| Q |
39 |
attcatattgatgaacacaagcaaagagtgtttttgcgtgggaaggctattacagtgatggaagggtttgttctggtctaatc |
121 |
Q |
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|||||| ||||| |||| || ||||| |||||||||||||||||||| | || ||||| ||||||| ||||||||| ||||| |
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| T |
27336536 |
attcatgttgataaacagaaacaaagggtgtttttgcgtgggaaggccgtaacggtgattgaagggtatgttctggtttaatc |
27336454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 27261528 - 27261428
Alignment:
| Q |
21 |
agagggggagttctcaatattcatattgatgaacacaagcaaagagtgtttttgcgtgggaaggctattacagtgatggaagggtttgttctggtctaat |
120 |
Q |
| |
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||||| |||| ||| || |||||| ||||| |||| || ||||| |||||||||||||||||||| | || ||||| |||||| ||||||||| |||| |
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| T |
27261528 |
agaggaggagctcttaacattcatgttgataaacaaaaacaaagggtgtttttgcgtgggaaggccgtaacggtgattaaagggtatgttctggtttaat |
27261429 |
T |
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| Q |
121 |
c |
121 |
Q |
| |
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| |
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| T |
27261428 |
c |
27261428 |
T |
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