View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4265_low_4 (Length: 449)

Name: NF4265_low_4
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4265_low_4
NF4265_low_4
[»] chr6 (18 HSPs)
chr6 (18-253)||(20226918-20227151)
chr6 (18-253)||(22120902-22121135)
chr6 (253-438)||(20227185-20227382)
chr6 (253-438)||(22121169-22121366)
chr6 (154-253)||(33107356-33107454)
chr6 (160-253)||(6162683-6162775)
chr6 (160-253)||(14257149-14257241)
chr6 (160-253)||(20824166-20824258)
chr6 (156-248)||(33106927-33107019)
chr6 (154-253)||(34984540-34984637)
chr6 (153-248)||(20824595-20824689)
chr6 (160-253)||(6162247-6162339)
chr6 (153-253)||(15147713-15147812)
chr6 (160-248)||(20228235-20228322)
chr6 (160-248)||(22122219-22122306)
chr6 (151-253)||(19595644-19595746)
chr6 (155-248)||(14257578-14257670)
chr6 (160-248)||(15148149-15148236)
[»] chr8 (5 HSPs)
chr8 (160-253)||(29917533-29917625)
chr8 (160-253)||(12734175-12734267)
chr8 (155-253)||(29917102-29917199)
chr8 (182-253)||(24845987-24846057)
chr8 (161-248)||(12734604-12734691)
[»] chr5 (20 HSPs)
chr5 (160-253)||(39402640-39402732)
chr5 (160-253)||(3191800-3191892)
chr5 (154-253)||(3192226-3192324)
chr5 (154-253)||(39402208-39402306)
chr5 (155-248)||(3878769-3878862)
chr5 (155-253)||(5747187-5747284)
chr5 (155-253)||(6543412-6543509)
chr5 (155-253)||(31093422-31093519)
chr5 (160-253)||(3879199-3879291)
chr5 (160-253)||(21949402-21949494)
chr5 (160-253)||(28641587-28641679)
chr5 (160-248)||(31162852-31162939)
chr5 (154-248)||(28641157-28641250)
chr5 (160-253)||(31162423-31162515)
chr5 (153-248)||(5746756-5746850)
chr5 (160-248)||(31092997-31093085)
chr5 (160-248)||(21949831-21949918)
chr5 (156-235)||(31176678-31176758)
chr5 (153-248)||(6543846-6543939)
chr5 (156-216)||(15978559-15978620)
[»] chr4 (29 HSPs)
chr4 (160-253)||(28505211-28505303)
chr4 (160-253)||(21235030-21235122)
chr4 (154-253)||(43979984-43980082)
chr4 (160-253)||(2669433-2669525)
chr4 (160-253)||(12922644-12922736)
chr4 (160-253)||(30546141-30546233)
chr4 (153-248)||(30545708-30545803)
chr4 (160-248)||(1317062-1317150)
chr4 (160-253)||(28957737-28957829)
chr4 (160-253)||(40841464-40841556)
chr4 (160-248)||(46263066-46263154)
chr4 (156-253)||(55347559-55347655)
chr4 (257-355)||(12107838-12107937)
chr4 (154-248)||(12923073-12923167)
chr4 (145-248)||(28957298-28957400)
chr4 (147-253)||(31228305-31228410)
chr4 (160-253)||(789897-789989)
chr4 (160-253)||(21235456-21235547)
chr4 (160-248)||(43979559-43979647)
chr4 (160-252)||(12108285-12108376)
chr4 (160-248)||(31227881-31227968)
chr4 (160-248)||(38025678-38025765)
chr4 (159-253)||(12107707-12107800)
chr4 (160-248)||(790326-790414)
chr4 (160-253)||(38026102-38026194)
chr4 (160-248)||(40841893-40841980)
chr4 (158-224)||(48554069-48554136)
chr4 (257-300)||(49424580-49424623)
chr4 (156-224)||(3296715-3296784)
[»] chr7 (13 HSPs)
chr7 (160-248)||(18443178-18443265)
chr7 (155-248)||(29784379-29784471)
chr7 (155-253)||(1244438-1244535)
chr7 (155-253)||(41298671-41298768)
chr7 (160-253)||(18443604-18443696)
chr7 (160-253)||(28898031-28898123)
chr7 (160-248)||(41298246-41298334)
chr7 (153-248)||(884677-884772)
chr7 (153-248)||(1244006-1244101)
chr7 (155-248)||(28898460-28898553)
chr7 (154-253)||(33847862-33847960)
chr7 (160-253)||(29783937-29784029)
chr7 (193-248)||(22954081-22954135)
[»] chr2 (23 HSPs)
chr2 (155-253)||(12090121-12090218)
chr2 (160-253)||(39096952-39097044)
chr2 (160-253)||(3854493-3854585)
chr2 (153-253)||(11451182-11451281)
chr2 (160-248)||(26525464-26525551)
chr2 (153-248)||(1804227-1804321)
chr2 (155-253)||(1804658-1804755)
chr2 (151-253)||(27377642-27377743)
chr2 (160-248)||(3854068-3854156)
chr2 (160-253)||(6476089-6476181)
chr2 (160-253)||(39096526-39096618)
chr2 (160-248)||(6476518-6476605)
chr2 (160-248)||(34038252-34038339)
chr2 (151-253)||(34037802-34037903)
chr2 (160-253)||(26525890-26525982)
chr2 (154-248)||(11450752-11450845)
chr2 (160-248)||(12089696-12089784)
chr2 (184-248)||(22701538-22701602)
chr2 (155-208)||(22704424-22704477)
chr2 (154-253)||(18107420-18107519)
chr2 (160-248)||(27378080-27378167)
chr2 (160-220)||(38110432-38110492)
chr2 (201-249)||(44930027-44930074)
[»] chr1 (19 HSPs)
chr1 (155-253)||(45230556-45230653)
chr1 (154-253)||(17968033-17968131)
chr1 (160-253)||(9122687-9122779)
chr1 (160-253)||(47410849-47410941)
chr1 (253-322)||(8997449-8997519)
chr1 (160-248)||(30427675-30427763)
chr1 (160-253)||(30428100-30428192)
chr1 (160-253)||(32266485-32266577)
chr1 (153-248)||(46802753-46802847)
chr1 (160-248)||(45230131-45230219)
chr1 (160-248)||(32266914-32267001)
chr1 (369-438)||(8997579-8997653)
chr1 (160-248)||(17968468-17968556)
chr1 (160-253)||(40124078-40124170)
chr1 (160-248)||(40124507-40124594)
chr1 (160-248)||(46802324-46802411)
chr1 (191-248)||(8997374-8997430)
chr1 (160-248)||(9123116-9123203)
chr1 (160-248)||(47410425-47410512)
[»] chr3 (21 HSPs)
chr3 (160-253)||(4199881-4199973)
chr3 (160-248)||(4199455-4199542)
chr3 (155-253)||(34949753-34949850)
chr3 (155-253)||(36899251-36899348)
chr3 (154-253)||(45539635-45539733)
chr3 (155-253)||(42606277-42606374)
chr3 (156-253)||(2388630-2388726)
chr3 (154-248)||(22406838-22406932)
chr3 (154-253)||(22407269-22407367)
chr3 (160-241)||(27475392-27475472)
chr3 (160-248)||(34950187-34950275)
chr3 (160-248)||(42606711-42606798)
chr3 (152-248)||(45539203-45539298)
chr3 (160-248)||(46690113-46690200)
chr3 (154-253)||(46689678-46689776)
chr3 (160-248)||(2389063-2389150)
chr3 (160-248)||(36899685-36899772)
chr3 (199-249)||(51587571-51587620)
chr3 (199-253)||(54589570-54589624)
chr3 (160-248)||(27475729-27475817)
chr3 (160-219)||(27013584-27013644)
[»] scaffold0085 (2 HSPs)
scaffold0085 (155-253)||(39847-39944)
scaffold0085 (155-248)||(39418-39510)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 20226918 - 20227151
Alignment:
Q  18 gatggccctcgtgcttctgctctatttaacacttccatataatagaaaactcattagaatagtaatcacgataagagataccataagttcattgtatcat 117  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  20226918 gatggccgtcgtgcttctgctctatttaacacttccatataacagaaaactcattagaatagtaatcccgatgagagatacgataagttcattgtatcat 20227017  T
Q  118 atatcttgtctcaatttagcgtttgataaaaagaataaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacatttt 217  Q
    || ||||||||||||||||||||| || |||||||||||||||||||||| | ||||||| ||  ||||||| |||||||||||||||| | || ||||     
T  20227018 atttcttgtctcaatttagcgttttat-aaaagaataaaggattaaatatatttttgctctctatattttgcgcgattttgagaatagttcctatatttc 20227116  T
Q  218 aaaaaattatttttaaaatccctatattttttctcc 253  Q
    || ||| |||||||||||| ||||||||||||||||    
T  20227117 aataaa-tatttttaaaattcctatattttttctcc 20227151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 22120902 - 22121135
Alignment:
Q  18 gatggccctcgtgcttctgctctatttaacacttccatataatagaaaactcattagaatagtaatcacgataagagataccataagttcattgtatcat 117  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  22120902 gatggccgtcgtgcttctgctctatttaacacttccatataacagaaaactcattagaatagtaatcccgatgagagatacgataagttcattgtatcat 22121001  T
Q  118 atatcttgtctcaatttagcgtttgataaaaagaataaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacatttt 217  Q
    || ||||||||||||||||||||| || |||||||||||||||||||||| | ||||||| ||  ||||||| |||||||||||||||| | || ||||     
T  22121002 atttcttgtctcaatttagcgttttat-aaaagaataaaggattaaatatatttttgctctctatattttgcgcgattttgagaatagttcctatatttc 22121100  T
Q  218 aaaaaattatttttaaaatccctatattttttctcc 253  Q
    || ||| |||||||||||| ||||||||||||||||    
T  22121101 aataaa-tatttttaaaattcctatattttttctcc 22121135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 253 - 438
Target Start/End: Original strand, 20227185 - 20227382
Alignment:
Q  253 cctaataagcaaacagaatgctgacgtggcaatatgtttattttatttgtattctttgtaaaaattaaaaccgggtttggggcaaataatttgatttgac 352  Q
    ||||||||| ||  |||||| ||| |||| || || |||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  20227185 cctaataagaaagtagaatgttgatgtggaaagatttttattttatttatattctttggaaaaattaaaaccgggtttgaggcaaataatttgatttgac 20227284  T
Q  353 ccgtgtt------------tccttcaccagcatggccattgttgttgcaagttccattccagtcgataaccaatcatcccttcagcttttgcgttcat 438  Q
    |||||||            |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20227285 ccgtgttcatctttttttttccttctccagcatggccattgttgctgcaagttccattccagtcgataaccaatcatcccttcagcttttgcgttcat 20227382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 253 - 438
Target Start/End: Original strand, 22121169 - 22121366
Alignment:
Q  253 cctaataagcaaacagaatgctgacgtggcaatatgtttattttatttgtattctttgtaaaaattaaaaccgggtttggggcaaataatttgatttgac 352  Q
    ||||||||| ||  |||||| ||| |||| || || |||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  22121169 cctaataagaaagtagaatgttgatgtggaaagatttttattttatttatattctttggaaaaattaaaaccgggtttgaggcaaataatttgatttgac 22121268  T
Q  353 ccgtgtt------------tccttcaccagcatggccattgttgttgcaagttccattccagtcgataaccaatcatcccttcagcttttgcgttcat 438  Q
    |||||||            |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22121269 ccgtgttcatctttttttttccttctccagcatggccattgttgctgcaagttccattccagtcgataaccaatcatcccttcagcttttgcgttcat 22121366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 33107454 - 33107356
Alignment:
Q  154 aaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    ||||| |||||||||| |||| ||||| |||||||| |||||||||||||||||| ||||||| ||  || | ||||||||||||||| |||||||||||    
T  33107454 aaagggttaaatatgtttttggtccctacattttgcgcgattttgagaatagtccctacatttcaatgaa-tgtttttaaaatccctacattttttctcc 33107356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 6162775 - 6162683
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||||| |||||||||||||||||  ||||||| || ||| | ||||||||||||||| |||||||||||    
T  6162775 ttaaatatgtttttggtccctacattttgcgcgattttgagaatagtctctacatttcaataaa-tgtttttaaaatccctacattttttctcc 6162683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 14257149 - 14257241
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||||||||    
T  14257149 ttaaatatgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacattttttctcc 14257241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 20824166 - 20824258
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||| |||||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||| ||||    
T  20824166 ttaaatatgtttttggtccctacattttacacgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacatttttcctcc 20824258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 33106927 - 33107019
Alignment:
Q  156 aggattaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||||||| |||| ||||| | ||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||| ||||||    
T  33106927 aggattaaatatgtttttggtccctacgttttgcacgattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctacattttt 33107019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 34984637 - 34984540
Alignment:
Q  154 aaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    ||||| |||||||||| |||| ||||| |||||||| |||||||||||||||||| ||||||| || ||| | |||||||||| |||| |||||||||||    
T  34984637 aaagggttaaatatgtttttggtccctacattttgcgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaat-cctacattttttctcc 34984540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 20824689 - 20824595
Alignment:
Q  153 taaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||| |||||||||| |||| ||||| |||||| | |||||||||||||| ||| ||||||| || ||| | ||||||||||||||| ||||||    
T  20824689 taaagggttaaatatgtttttggtccctacattttacgcgattttgagaataatccctacatttcaataaa-tgtttttaaaatccctacattttt 20824595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 6162247 - 6162339
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||  ||||| | |||||||| ||||||||||||||| |||||||| || ||| | ||||||||||||||| |||||| ||||    
T  6162247 ttaaatatgttttttgtccctacgttttgcacaattttgagaatagtcattacatttcaataaa-tgtttttaaaatccctacatttttcctcc 6162339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 15147713 - 15147812
Alignment:
Q  153 taaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctc 252  Q
    |||||| |||||||||| |||| ||||| |||||| | |||||| ||||||| ||| ||||||| || ||||  ||||||||||||||| |||||| |||    
T  15147713 taaagggttaaatatgtttttggtccctacattttacgcgatttagagaataatccctacatttcaataaatg-tttttaaaatccctacatttttcctc 15147811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 20228322 - 20228235
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    ||||||||||  ||| |||||||| ||| ||| |||||||||||||| | |||||||||| ||| | ||||||||||||||| ||||||    
T  20228322 ttaaatatgttattggtccctgcaattttcacaattttgagaatagttcctacattttaataaa-tgtttttaaaatccctacattttt 20228235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 22122306 - 22122219
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    ||||||||||  ||| |||||||| ||| ||| |||||||||||||| | |||||||||| ||| | ||||||||||||||| ||||||    
T  22122306 ttaaatatgttattggtccctgcaattttcacaattttgagaatagttcctacattttaataaa-tgtttttaaaatccctacattttt 22122219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 253
Target Start/End: Complemental strand, 19595746 - 19595644
Alignment:
Q  151 aataaaggattaaatatgtatttgctccctgcattttgcacgattttga-gaatagtccttacattttaaaaaattatttttaaaatccctatatttttt 249  Q
    |||||||| ||||||||||  ||  ||| | ||||||||||  |||| | ||||||||| ||||||| || |||| |||||||||||||||||||||| |    
T  19595746 aataaagggttaaatatgttattagtccatacattttgcacctttttaaagaatagtccctacatttcaataaat-atttttaaaatccctatattttat 19595648  T
Q  250 ctcc 253  Q
    ||||    
T  19595647 ctcc 19595644  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 14257670 - 14257578
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||| |||||||||| |||| |||||  |||||   | |||||||||||||||| ||||||| || ||| | ||||||||||||||| ||||||    
T  14257670 aagggttaaatatgtttttggtccctatattttatgcaattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacattttt 14257578  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 15148236 - 15148149
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| |||||  ||||| | | ||||||| |||||||| ||||||| || |||| ||||| |||||||||| ||||||    
T  15148236 ttaaatatgtttttggtccctatattttacgcaattttgataatagtccctacatttcaataaatgatttt-aaaatccctacattttt 15148149  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 29917625 - 29917533
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| || ||| | ||||||||||||||| |||||||||||    
T  29917625 ttaaatatgtttttggtccctacattttgcacgattttgagaatagtccttacatttcaataaa-tgtttttaaaatccctacattttttctcc 29917533  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 12734175 - 12734267
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||||| |||||||||||||||||| ||||||| ||  || ||||||||||||||||| |||||||||||    
T  12734175 ttaaatatgtttttggtccctacattttgcgcgattttgagaatagtccctacatttcaatgaa-tatttttaaaatccctacattttttctcc 12734267  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 29917102 - 29917199
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||| |||||||||| |||| ||||| | |||||| |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||||||||    
T  29917102 aagggttaaatatgtttttgatccctacgttttgcgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacattttttctcc 29917199  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 24845987 - 24846057
Alignment:
Q  182 cattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||||||||||||||||||||||| || ||| | |||||||||| ||||||||||| ||||    
T  24845987 cattttgcacaattttgagaatagtccttacatttcaataaa-tgtttttaaaattcctatatttttcctcc 24846057  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 12734691 - 12734604
Alignment:
Q  161 taaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    ||||||||| |||| ||||| | ||||||||||||||||||| |||| ||||||||| || ||| | ||||||||||||||| ||||||    
T  12734691 taaatatgtttttggtccctacgttttgcacgattttgagaattagttcttacatttcaataaa-tgtttttaaaatccctacattttt 12734604  T

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Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 39402732 - 39402640
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||| |||||||||||||||||||||||||||| || ||| ||||||||||||||||| |||||| ||||    
T  39402732 ttaaatatgtttttggtccctacattttacacgattttgagaatagtccttacatttcaataaa-tatttttaaaatccctacatttttcctcc 39402640  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 3191800 - 3191892
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||  ||||| ||||||||||||||||||||||||||||||||||| || ||| | ||||||||||||||| |||||| ||||    
T  3191800 ttaaatatgtttttagtccctacattttgcacgattttgagaatagtccttacatttcaataaa-tgtttttaaaatccctacatttttcctcc 3191892  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 3192324 - 3192226
Alignment:
Q  154 aaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    ||||| |||||||||| |||| |||||  ||||||  |||||||||||||||||||||||||| || ||| | ||||||||||||||| |||||||||||    
T  3192324 aaagggttaaatatgtttttggtccctatattttgtgcgattttgagaatagtccttacatttcaataaa-tgtttttaaaatccctacattttttctcc 3192226  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 39402208 - 39402306
Alignment:
Q  154 aaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    ||||| |||||||||| |||| ||||| |||||||| |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||| ||||    
T  39402208 aaagggttaaatatgtttttggtccctacattttgcgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacatttttcctcc 39402306  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 3878769 - 3878862
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||| |||||||||| |||| ||||| | ||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||||||||||    
T  3878769 aagggttaaatatgtttttggtccctacgttttgcacgattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctatattttt 3878862  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 5747284 - 5747187
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||| |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||| ||||    
T  5747284 aagggttaaatatgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacatttttcctcc 5747187  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 6543412 - 6543509
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||| |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||| ||||    
T  6543412 aagggttaaatatgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacatttttcctcc 6543509  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 31093519 - 31093422
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||| |||||||||| |||| ||||| |||||||| ||||||||| |||||||| ||||||| ||  |||  ||||||||||||||| |||||||||||    
T  31093519 aagggttaaatatgtttttggtccctacattttgcgcgattttgaaaatagtccctacatttcaatgaatg-tttttaaaatccctacattttttctcc 31093422  T

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Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 3879291 - 3879199
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||| | |||| ||||| |||||||| |||||||||||||| ||| ||||||| ||  || | |||||||||||||||||||||||||||    
T  3879291 ttaaatatatttttggtccctacattttgcgcgattttgagaataatccctacatttcaatgaa-tgtttttaaaatccctatattttttctcc 3879199  T

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Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 21949402 - 21949494
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||| ||||    
T  21949402 ttaaatatgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacatttttcctcc 21949494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 28641679 - 28641587
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||| ||||    
T  28641679 ttaaatatgtgtttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacatttttcctcc 28641587  T

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Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 31162939 - 31162852
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| |||||| | |||||||||||||| ||||||||||| || ||| | ||||||||||||||| ||||||    
T  31162939 ttaaatatgtttttggtccctacattttacgcgattttgagaataatccttacatttcaataaa-tgtttttaaaatccctacattttt 31162852  T

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Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 28641157 - 28641250
Alignment:
Q  154 aaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    ||||| |||||||||| |||| ||||| |||||| | |||||||||||||| ||| ||||||| || ||| | ||||||||||||||| ||||||    
T  28641157 aaagggttaaatatgtttttggtccctacattttacgcgattttgagaataatccctacatttcaataaa-tgtttttaaaatccctacattttt 28641250  T

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Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 31162423 - 31162515
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||| |  ||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||| ||||    
T  31162423 ttaaatatgtttttggtccctacattttacgtgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacatttttcctcc 31162515  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 5746756 - 5746850
Alignment:
Q  153 taaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||| |||||||||| |||| ||||| |||||| | |||||||||||||| ||| ||||||| || ||| | |||| |||||||||| ||||||    
T  5746756 taaagggttaaatatgtttttggtccctacattttacgcgattttgagaataatccctacatttcaataaa-tgttttaaaaatccctacattttt 5746850  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 31092997 - 31093085
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||  | ||||||||||||||||||| |||||||||||||| || | | | ||||||||||||||| ||||||    
T  31092997 ttaaatatgtttttggtcccaacgttttgcacgattttgagaattagtccttacatttcaataga-tgtttttaaaatccctacattttt 31093085  T

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Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 21949918 - 21949831
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||| ||||| |||| ||||| |||||| | ||||||| |||||||||| ||||||| || ||||  ||||||||||||||| ||||||    
T  21949918 ttaattatgtttttggtccctacattttacgcgattttaagaatagtccctacatttcaataaatg-tttttaaaatccctacattttt 21949831  T

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Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 31176678 - 31176758
Alignment:
Q  156 aggattaaatatgtatttgctccctgcattttgcacgattttga-gaatagtccttacattttaaaaaattatttttaaaa 235  Q
    |||||||||||||| |||| ||||| ||||| ||  || ||||| |||||||||||||||||||| ||| | |||||||||    
T  31176678 aggattaaatatgtttttggtccctacatttcgcgtgactttgaagaatagtccttacattttaagaaaatgtttttaaaa 31176758  T

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Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 6543939 - 6543846
Alignment:
Q  153 taaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||| |||||||||| |||| ||| | |||||| | |||||||||||||| ||| ||||||| || ||| | ||||||||||||||| ||||||    
T  6543939 taaagggttaaatatgtttttggtcc-tacattttacgcgattttgagaataatccctacatttcaataaa-tgtttttaaaatccctacattttt 6543846  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 15978559 - 15978620
Alignment:
Q  156 aggattaaatatgtatttgctccctgcattttgcacgattttg-agaatagtccttacattt 216  Q
    |||||||||||||| |||| ||||| ||||||||  || |||| ||||||||||||||||||    
T  15978559 aggattaaatatgtttttgatccctacattttgcgtgactttgaagaatagtccttacattt 15978620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 28505211 - 28505303
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| || ||| | ||||||||||||||| |||||| ||||    
T  28505211 ttaaatatgtttttggtccctacattttgcacgattttgagaatagtccttacatttcaataaa-tgtttttaaaatccctacatttttcctcc 28505303  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 21235030 - 21235122
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||| || ||| | ||||||||||||||| |||||| ||||    
T  21235030 ttaaatatgtttttggtccctacattttgcacgattttgataatagtccttacatttcaataaa-tgtttttaaaatccctacatttttcctcc 21235122  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 43980082 - 43979984
Alignment:
Q  154 aaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    ||||| |||||||||| |||| ||||| |||||||| |||||||||||||||||| ||||||| ||  || | ||||||||||||||| |||||||||||    
T  43980082 aaagggttaaatatgtttttggtccctacattttgcgcgattttgagaatagtccctacatttcaatgaa-tgtttttaaaatccctacattttttctcc 43979984  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 2669525 - 2669433
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||||||||    
T  2669525 ttaaatatgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacattttttctcc 2669433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 12922644 - 12922736
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||||| | |||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||||||||    
T  12922644 ttaaatatgtttttggtccctacattttgcgcaattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacattttttctcc 12922736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 30546233 - 30546141
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||||| |||||||||||||||||  ||||||| ||  || ||||||||||||||||| |||||||||||    
T  30546233 ttaaatatgtttttggtccctacattttgcgcgattttgagaatagtctctacatttcaatgaa-tatttttaaaatccctacattttttctcc 30546141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 30545708 - 30545803
Alignment:
Q  153 taaaggattaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||| |||||||||| |||| ||||| | ||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||| ||||||    
T  30545708 taaagggttaaatatgtttttggtccctacgttttgcacgattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctacattttt 30545803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 1317062 - 1317150
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| | ||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||| ||||||    
T  1317062 ttaaatatgtttttggtccctacgttttgcacgattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctacattttt 1317150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 28957829 - 28957737
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||| ||||    
T  28957829 ttaaatatgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacatttttcctcc 28957737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 40841464 - 40841556
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||| | ||||||| |||||||||| ||||||| || ||||  ||||||||||||||| |||||||||||    
T  40841464 ttaaatatgtttttggtccctacattttacgcgattttaagaatagtccctacatttcaataaatg-tttttaaaatccctacattttttctcc 40841556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 46263154 - 46263066
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| | ||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||| ||||||    
T  46263154 ttaaatatgtttttggtccctacgttttgcacgattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctacattttt 46263066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 253
Target Start/End: Original strand, 55347559 - 55347655
Alignment:
Q  156 aggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||||| | |||| ||||| |||||| | | |||||||||||||||| |||||||||| ||| | ||||||||||||||| |||||| ||||    
T  55347559 aggattaaatatatttttggtccctacattttacgcaattttgagaatagtccctacattttaataaa-tgtttttaaaatccctacatttttcctcc 55347655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 355
Target Start/End: Original strand, 12107838 - 12107937
Alignment:
Q  257 ataagcaaacagaatgctgacgtggcaatatgtttattttatttg-tattctttgtaaaaattaaaaccgggtttggggcaaataatttgatttgacccg 355  Q
    ||||| ||||| ||||||| |||| |||||| ||||||||||||  ||||| |||||||||||| |||||||||||   |||||  ||||||||||||||    
T  12107838 ataagaaaacataatgctgccgtgacaatatttttattttattttatattccttgtaaaaattataaccgggtttgaaccaaatggtttgatttgacccg 12107937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 12923167 - 12923073
Alignment:
Q  154 aaaggattaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    ||||| || ||||||| |||| ||||| ||||||| ||||||||||||| |||||||||||||| || ||| | ||||||||||||||| ||||||    
T  12923167 aaagggttcaatatgtttttggtccctacattttgtacgattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctacattttt 12923073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 28957298 - 28957400
Alignment:
Q  145 aaaaagaataaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatat 244  Q
    ||||| || ||||| |||||||||| |||| ||||| |||||| | |||||||||||||| ||| ||||||| || ||| | ||||||||||||||| ||    
T  28957298 aaaaaaaaaaaagggttaaatatgtttttggtccctacattttacgcgattttgagaataatccctacatttcaataaa-tgtttttaaaatccctacat 28957396  T
Q  245 tttt 248  Q
    ||||    
T  28957397 tttt 28957400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 147 - 253
Target Start/End: Complemental strand, 31228410 - 31228305
Alignment:
Q  147 aaagaataaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattt 246  Q
    |||||| ||| | |||||||||| |||| ||||| |||||| | |||||||||||||||| | ||||||| || ||| | ||||||||||||||| ||||    
T  31228410 aaagaaaaaatggttaaatatgtttttgatccctacattttacgcgattttgagaatagttcctacatttcaataaa-tgtttttaaaatccctacattt 31228312  T
Q  247 tttctcc 253  Q
    || ||||    
T  31228311 ttcctcc 31228305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 789897 - 789989
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||||| | ||||||| |||||||| ||||||| ||  |||  ||||||||||||||| |||||||||||    
T  789897 ttaaatatgtttttggtccctacattttgcgcaattttgaaaatagtccatacatttcaatgaatg-tttttaaaatccctacattttttctcc 789989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 21235547 - 21235456
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| ||| |||||| |||||||||||||||||| |||||||| ||||||| || ||| | ||||||||||| ||| |||||| ||||    
T  21235547 ttaaatatgttttt-ctccctacattttgcacgattttgataatagtccctacatttcaataaa-tgtttttaaaatctctacatttttcctcc 21235456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 43979559 - 43979647
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| |||||   ||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||| ||||||    
T  43979559 ttaaatatgtttttggtccctatgttttgcacgattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctacattttt 43979647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 12108376 - 12108285
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctc 252  Q
    ||||||||||  ||| |||||  |||||  ||||||||||||||||||| ||||||| || ||| | ||||||||||||||| ||||||||||    
T  12108376 ttaaatatgttattggtccctaaattttatacgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacattttttctc 12108285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 31227881 - 31227968
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| |||||| | |||||||||||||| ||| ||||||| || ||| | ||||||||||||||| ||||||    
T  31227881 ttaaatatgtttttggtccctacattttacgcgattttgagaataatccctacatttcaataaa-tgtttttaaaatccctacattttt 31227968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 38025678 - 38025765
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| |||||| | | |||||||||||||||||||||||| || |||  | |||||||||||||| ||||||    
T  38025678 ttaaatatgtctttggtccctacattttacgcaattttgagaatagtccttacatttcaataaa-aaattttaaaatccctacattttt 38025765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 253
Target Start/End: Original strand, 12107707 - 12107800
Alignment:
Q  159 attaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    ||||||||||| |||| ||||| |||||| | |||||||||||||| | | |||||||||| ||| | ||| ||||||||||| ||||| |||||    
T  12107707 attaaatatgtttttggtccctacattttacgcgattttgagaataatacctacattttaataaa-tgtttctaaaatccctacattttatctcc 12107800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 790414 - 790326
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| |||||   ||||||||||||||||||| |||||||||||||| || ||| | |||||||||| |||| ||||||    
T  790414 ttaaatatgtttttggtccctaagttttgcacgattttgagaattagtccttacatttcaataaa-tgtttttaaaattcctacattttt 790326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 38026194 - 38026102
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| | ||| |||||| | | |||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||| ||||    
T  38026194 ttaaatatgtttttggttcctacattttacgcaattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacatttttcctcc 38026102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 40841980 - 40841893
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||| ||||| |||| ||||| |||||| | ||||||| |||||||||| ||||||| || ||||  ||||||||||||||| ||||||    
T  40841980 ttaattatgtttttggtccctacattttacgcgattttaagaatagtccctacatttcaataaatg-tttttaaaatccctacattttt 40841893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 48554069 - 48554136
Alignment:
Q  158 gattaaatatgtatttgctccctgcattttgcacgattttga-gaatagtccttacattttaaaaaat 224  Q
    |||||||||||| |||| ||||| ||||||||  || ||||| |||||||||||||||||||| ||||    
T  48554069 gattaaatatgtttttggtccctacattttgcgtgactttgaagaatagtccttacattttaataaat 48554136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 300
Target Start/End: Original strand, 49424580 - 49424623
Alignment:
Q  257 ataagcaaacagaatgctgacgtggcaatatgtttattttattt 300  Q
    |||||||||||||||||||||||||| |||| | ||||||||||    
T  49424580 ataagcaaacagaatgctgacgtggctatatttatattttattt 49424623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 3296715 - 3296784
Alignment:
Q  156 aggattaaatatgtatttgctccctgcattttgcacgattttga-gaatagtccttacattttaaaaaat 224  Q
    |||||||||||| | |||| ||||| ||||||||  || ||||| |||||||||||||||||||| ||||    
T  3296715 aggattaaatatatttttgatccctacattttgcgtgactttgaagaatagtccttacattttaataaat 3296784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 18443178 - 18443265
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| || ||| | ||||||||||||||| ||||||    
T  18443178 ttaaatatgtttttggtccctacattttgcacgattttgagaatagtccttacatttcaataaa-tgtttttaaaatccctacattttt 18443265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 29784471 - 29784379
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||| |||||||||| |||| ||||| | |||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||| ||||||    
T  29784471 aagggttaaatatgtttttggtccctacgttttgcacgattttgagaatagtctttacatttcaataaa-tatttttaaaatccctacattttt 29784379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 1244535 - 1244438
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||| |||||||||| |||| ||||| |||||||| |||||||||||||||||| ||||||| ||  || | ||||||||||||||| |||||||||||    
T  1244535 aagggttaaatatgtttttggtccctacattttgcgcgattttgagaatagtccctacatttcaatgaa-tgtttttaaaatccctacattttttctcc 1244438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 41298768 - 41298671
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||| |||||||||| |||| ||||| |||||||| |||||||||||||||||| ||||||| ||  || | ||||||||||||||| |||||||||||    
T  41298768 aagggttaaatatgtttttggtccctacattttgcgcgattttgagaatagtccctacatttcaatgaa-tgtttttaaaatccctacattttttctcc 41298671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 18443696 - 18443604
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||| | |||||||| |||||||||||||||||| ||||||| || ||| | |||||||||||||||||||||| ||||    
T  18443696 ttaaatatgtttttggtccttacattttgcgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctatatttttcctcc 18443604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 28898031 - 28898123
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||||| |||||||||||||||||| ||||||| ||  || | ||||||||||||||| |||||||||||    
T  28898031 ttaaatatgtttttggtccctacattttgcgcgattttgagaatagtccctacatttcaatgaa-tgtttttaaaatccctacattttttctcc 28898123  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 41298246 - 41298334
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| ||||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||| ||||||    
T  41298246 ttaaatatgtttttggtccctacattttgcacgattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctacattttt 41298334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 884677 - 884772
Alignment:
Q  153 taaaggattaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||| |||||||||| |||| ||||| | ||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||| ||||||    
T  884677 taaagggttaaatatgtttttggtccctacgttttgcacgattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctacattttt 884772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 1244006 - 1244101
Alignment:
Q  153 taaaggattaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||| |||||||||| |||| ||||| | ||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||| ||||||    
T  1244006 taaagggttaaatatgtttttggtccctacgttttgcacgattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctacattttt 1244101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 28898553 - 28898460
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||| |||||||||| |||| ||||| | ||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||| ||||||    
T  28898553 aagggttaaatatgtttttggtccctacgttttgcacgattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctacattttt 28898460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 33847862 - 33847960
Alignment:
Q  154 aaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    ||||| |||||||||| |||| |||||  ||||| | |||||||||||||||||  ||||||| || ||| | ||||||||||||||| |||||||||||    
T  33847862 aaagggttaaatatgtttttggtccctatattttacgcgattttgagaatagtctctacatttcaataaa-tgtttttaaaatccctacattttttctcc 33847960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 29783937 - 29784029
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||  ||||| |||||||  |||||||||||||||||| || |||| || ||| | |||||||||| |||| |||||||||||    
T  29783937 ttaaatatgtttttagtccctacattttgtgcgattttgagaatagtccctatatttcaataaa-tgtttttaaaattcctacattttttctcc 29784029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 22954081 - 22954135
Alignment:
Q  193 attttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||||||||| |||||||||| ||| | ||||||||||||||| ||||||    
T  22954081 attttgagaatagtccctacattttaataaa-tgtttttaaaatccctacattttt 22954135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 12090218 - 12090121
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||| |||||||||| |||| |||||||||||||| |||||||||||||||||| ||||||| ||  || | ||||||||||||||| |||||||||||    
T  12090218 aagggttaaatatgtttttggtccctgcattttgcgcgattttgagaatagtccctacatttcaatgaa-tgtttttaaaatccctacattttttctcc 12090121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 39097044 - 39096952
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||| ||||||||||| || ||| | ||||||||||||||| |||||| ||||    
T  39097044 ttaaatatgtttttggtccctacattttgcacgattttgagaataatccttacatttcaataaa-tgtttttaaaatccctacatttttcctcc 39096952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 3854585 - 3854493
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||||| |||||||||||||||||| ||||||| ||  || | ||||||||||||||| |||||||||||    
T  3854585 ttaaatatgtttttggtccctacattttgcgcgattttgagaatagtccctacatttcaatgaa-tgtttttaaaatccctacattttttctcc 3854493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 253
Target Start/End: Complemental strand, 11451281 - 11451182
Alignment:
Q  153 taaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctc 252  Q
    |||||| |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||| |||    
T  11451281 taaagggttaaatatgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacatttttcctc 11451183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 26525464 - 26525551
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| | |||||||||||||||||| |||| ||||||||| || ||| ||||||||||||||||| ||||||    
T  26525464 ttaaatatgtttttggtccctacgttttgcacgattttgagagtagttcttacatttcaataaa-tatttttaaaatccctacattttt 26525551  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 1804227 - 1804321
Alignment:
Q  153 taaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||| |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| ||||||    
T  1804227 taaagggttaaatatgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacattttt 1804321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 1804755 - 1804658
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||| |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||| ||||    
T  1804755 aagggttaaatatgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacatttttcctcc 1804658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 151 - 253
Target Start/End: Original strand, 27377642 - 27377743
Alignment:
Q  151 aataaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttc 250  Q
    |||| ||| |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||| |    
T  27377642 aatatagggttaaatatgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacatttttcc 27377740  T
Q  251 tcc 253  Q
    |||    
T  27377741 tcc 27377743  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 3854068 - 3854156
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| | ||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||| ||||||    
T  3854068 ttaaatatgtttttggtccctacgttttgcacgattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctacattttt 3854156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 6476089 - 6476181
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||| ||||    
T  6476089 ttaaatatgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacatttttcctcc 6476181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 39096526 - 39096618
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| |||||  ||||||  |||||||||||||||||||||||||| || ||| | |||||||||||| || |||||||||||    
T  39096526 ttaaatatgtttttggtccctatattttgtgcgattttgagaatagtccttacatttcaataaa-tgtttttaaaatccatacattttttctcc 39096618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 6476605 - 6476518
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| ||||||    
T  6476605 ttaaatatgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacattttt 6476518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 34038339 - 34038252
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    ||||||| ||||||| ||||| | |||||||||||||||||||||||  |||||||| || ||| |||||||||||| |||| ||||||    
T  34038339 ttaaatacgtatttggtccctacgttttgcacgattttgagaatagtttttacatttcaataaa-tatttttaaaattcctacattttt 34038252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 151 - 253
Target Start/End: Original strand, 34037802 - 34037903
Alignment:
Q  151 aataaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttc 250  Q
    |||||||| ||||||| || |||| || ||  ||||||| |||||||||||||||||| ||||||| ||  || | ||||||||||||||| ||||||||    
T  34037802 aataaagggttaaatacgtttttggtctctatattttgcgcgattttgagaatagtccctacatttcaatgaa-tgtttttaaaatccctacattttttc 34037900  T
Q  251 tcc 253  Q
    |||    
T  34037901 tcc 34037903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 26525982 - 26525890
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||||| ||||||||| |||||||| || |||| || ||||  ||||||||||||||| | |||||||||    
T  26525982 ttaaatatgtttttggtccctacattttgcgcgattttgataatagtccctatatttcaataaatg-tttttaaaatccctacaatttttctcc 26525890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 11450752 - 11450845
Alignment:
Q  154 aaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    ||||| |||||||||| |||| ||||| |||||| | |||||||||||||| ||| ||||||| || ||| | |||| |||||||||| ||||||    
T  11450752 aaagggttaaatatgtttttggtccctacattttacgcgattttgagaataatccctacatttcaataaa-tgttttaaaaatccctacattttt 11450845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 12089696 - 12089784
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| | |||||||| |||||||||| |||| ||||||||| || ||| | ||||||||||||||| ||||||    
T  12089696 ttaaatatgtttttggtccctacgttttgcacaattttgagaattagttcttacatttcaataaa-tgtttttaaaatccctacattttt 12089784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 22701538 - 22701602
Alignment:
Q  184 ttttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    ||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||| ||||||    
T  22701538 ttttgcacgattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctacattttt 22701602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 22704477 - 22704424
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtcc 208  Q
    |||| |||||||||| |||| ||||| |||||||| ||||||||||||||||||    
T  22704477 aagggttaaatatgtttttggtccctacattttgcgcgattttgagaatagtcc 22704424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 18107519 - 18107420
Alignment:
Q  154 aaaggattaaatatgtatttgctccctgcattttgcacga-ttttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctc 252  Q
    ||||| |||||||||| |||  ||||||||||||||  || |||  |||||| |||||||||||||| ||| | ||||||||||||||| |||||| |||    
T  18107519 aaagggttaaatatgtttttagtccctgcattttgcgtgactttaaagaataatccttacattttaataaa-tgtttttaaaatccctaaatttttcctc 18107421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 27378167 - 27378080
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| |||||| | |||||||||||||| ||| ||||||| || ||| | |||| |||||||||| ||||||    
T  27378167 ttaaatatgtttttggtccctacattttacgcgattttgagaataatccctacatttcaataaa-tgttttaaaaatccctacattttt 27378080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 38110492 - 38110432
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaa 220  Q
    ||||||||||||||| ||||| |||||| | | ||||||| | |||||| |||||||||||    
T  38110492 ttaaatatgtatttgatccctacattttacgcaattttgaaattagtccctacattttaaa 38110432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 44930027 - 44930074
Alignment:
Q  201 aatagtccttacattttaaaaaattatttttaaaatccctatatttttt 249  Q
    |||||||||||||||| || |||| |||||||||||||||| |||||||    
T  44930027 aatagtccttacatttcaataaat-atttttaaaatccctacatttttt 44930074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 45230653 - 45230556
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||| |||||||||| |||| ||||| |||||||| |||||||||||||||||| ||||||| ||  || | |||||||||||||||||||||||||||    
T  45230653 aagggttaaatatgtttttggtccctacattttgcgcgattttgagaatagtccctacatttcaatgaa-tgtttttaaaatccctatattttttctcc 45230556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 17968033 - 17968131
Alignment:
Q  154 aaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    ||||| |||||||||| |||| ||||| |||||||| |||||||||||||||||| ||||||| ||  || | ||||||||||||||| |||||||||||    
T  17968033 aaagggttaaatatgtttttggtccctacattttgcgcgattttgagaatagtccctacatttcaatgaa-tgtttttaaaatccctacattttttctcc 17968131  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 9122687 - 9122779
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||  |||||| | |||||||||||||||||||||||||| || ||| | ||||||||||||||| |||||||||||    
T  9122687 ttaaatatgtttttggtccccacattttacgcgattttgagaatagtccttacatttcaataaa-tgtttttaaaatccctacattttttctcc 9122779  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 47410941 - 47410849
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||||||||    
T  47410941 ttaaatatgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacattttttctcc 47410849  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 8997449 - 8997519
Alignment:
Q  253 cctaataagcaaacagaatgctgacgtggcaatatgtttatttta-tttgtattctttgtaaaaattaaaa 322  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||| ||| ||||| |||||||||||||||    
T  8997449 cctaataagcaaacaaaatgctgacgtgacaatatttttattttattttatattccttgtaaaaattaaaa 8997519  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 30427675 - 30427763
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| | ||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||| ||||||    
T  30427675 ttaaatatgtttttggtccctacgttttgcacgattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctacattttt 30427763  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 30428192 - 30428100
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||||| |||||||||||||||| | ||||||| ||  || | ||||||||||||||| |||||||||||    
T  30428192 ttaaatatgtttttggtccctacattttgcgcgattttgagaatagttcctacatttcaatgaa-tgtttttaaaatccctacattttttctcc 30428100  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 32266485 - 32266577
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||| ||||    
T  32266485 ttaaatatgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacatttttcctcc 32266577  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 46802847 - 46802753
Alignment:
Q  153 taaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||| |||||||||| |||| ||||| ||||||  || ||||||| |||||||| |||||||||| ||||  ||||||||||||||| ||||||    
T  46802847 taaagggttaaatatgtttttggtccctacattttatacaattttgaaaatagtccctacattttaataaatg-tttttaaaatccctacattttt 46802753  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 45230131 - 45230219
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| | |||||||| |||||||||| |||||||||||||| || ||| | ||||||||||||||| ||||||    
T  45230131 ttaaatatgtttttggtccctacgttttgcactattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctacattttt 45230219  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 32267001 - 32266914
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| |||||| | |||||||||||||| ||| ||||||| || ||| | ||||||||||||||| ||||||    
T  32267001 ttaaatatgtttttggtccctacattttacgcgattttgagaataatccctacatttcaataaa-tgtttttaaaatccctacattttt 32266914  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 438
Target Start/End: Original strand, 8997579 - 8997653
Alignment:
Q  369 agcatggccattgttgttgcaagttccattccagtcga-----taaccaatcatcccttcagcttttgcgttcat 438  Q
    |||||| ||||||||| ||||||||||||||||||| |     |||||||||||| ||||||||||||| |||||    
T  8997579 agcatgaccattgttgctgcaagttccattccagtccagtccataaccaatcatctcttcagcttttgcattcat 8997653  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 17968556 - 17968468
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||| | | ||||||||||||||||||| ||||| |||||||| || ||| | ||||||||||||||| ||||||    
T  17968556 ttaaatatgtttttggtccatacgttttgcacgattttgagaattagtctttacatttcaataaa-tgtttttaaaatccctacattttt 17968468  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 40124078 - 40124170
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||| | |||||| |  ||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||| ||||    
T  40124078 ttaaatatgtttttggtccttacattttacttgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacatttttcctcc 40124170  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 40124594 - 40124507
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||| | |||| ||||| |||||| | |||||||||||||| ||| ||||||| || ||| | ||||||||||||||| ||||||    
T  40124594 ttaaatatatttttggtccctacattttacgcgattttgagaataatccctacatttcaataaa-tgtttttaaaatccctacattttt 40124507  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 46802324 - 46802411
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||  |||||| | |||||||||||||||||| ||||||| || |||   ||||||||||||||| ||||||    
T  46802324 ttaaatatgtttttggtccccacattttacgcgattttgagaatagtccctacatttcaataaa-agtttttaaaatccctacattttt 46802411  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 8997374 - 8997430
Alignment:
Q  191 cgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||||||||||| ||||||| || ||| | ||||||||||||||| ||||||    
T  8997374 cgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacattttt 8997430  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 9123203 - 9123116
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| ||||||   | |||||||||||||||  ||||||| || ||| | ||||||||||||||| ||||||    
T  9123203 ttaaatatgtttttggtccctacattttatgcaattttgagaatagtctctacatttcaataaa-tgtttttaaaatccctacattttt 9123116  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 47410425 - 47410512
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| |||||  |||||   | |||||||||||||||| ||||||| || ||| | ||||||||||||||| ||||||    
T  47410425 ttaaatatgtttttggtccctatattttatgcaattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacattttt 47410512  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 253
Target Start/End: Complemental strand, 4199973 - 4199881
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| |||| ||||| |||||||| |||||||||||||||||| ||||||| || ||| | |||||||||||||||||||||| ||||    
T  4199973 ttaaatatgtttttggtccctacattttgcgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctatatttttcctcc 4199881  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 4199455 - 4199542
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| |||||||||||||||||||||||||||||| |||| || ||| | ||||||||||||||| ||||||    
T  4199455 ttaaatatgtttttggtccctacattttgcacgattttgagaatagtccttatatttcaataaa-tgtttttaaaatccctacattttt 4199542  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 34949753 - 34949850
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||| |||||||||| |||| ||||| |||||||| |||||||||||||||||| ||||||| ||  || | ||||||||||||||| |||||||||||    
T  34949753 aagggttaaatatgtttttggtccctacattttgcgcgattttgagaatagtccctacatttcaatgaa-tgtttttaaaatccctacattttttctcc 34949850  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 36899251 - 36899348
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||| |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||||||||    
T  36899251 aagggttaaatatgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacattttttctcc 36899348  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 45539733 - 45539635
Alignment:
Q  154 aaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    ||||| |||||||||| |||| ||||| |||||| | ||||||| |||||||||| ||||||| || ||||  ||||||||||||||| |||||||||||    
T  45539733 aaagggttaaatatgtttttggtccctacattttacgcgattttaagaatagtccctacatttcaataaatg-tttttaaaatccctacattttttctcc 45539635  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 42606277 - 42606374
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||| |||||| ||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||||||||    
T  42606277 aagggttaaatttgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacattttttctcc 42606374  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 253
Target Start/End: Original strand, 2388630 - 2388726
Alignment:
Q  156 aggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    ||||| |||||||| |||| ||||| |||||| | |||||||||||||||||  ||||||| || ||| | ||||||||||||||| |||||||||||    
T  2388630 aggatcaaatatgtttttggtccctacattttacgcgattttgagaatagtctctacatttcaataaa-tgtttttaaaatccctacattttttctcc 2388726  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 22406838 - 22406932
Alignment:
Q  154 aaaggattaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    ||||| |||||||||| |||| ||| | | ||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||| ||||||    
T  22406838 aaagggttaaatatgtttttggtccttacgttttgcacgattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctacattttt 22406932  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 22407367 - 22407269
Alignment:
Q  154 aaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    ||||| |||||||||| |||| ||||| |||||||| | ||||||| |||||||| ||||||| ||  |||  ||||||||||||||| |||||||||||    
T  22407367 aaagggttaaatatgtttttggtccctacattttgcgcaattttgaaaatagtccctacatttcaatgaatg-tttttaaaatccctacattttttctcc 22407269  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 27475392 - 27475472
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatcccta 241  Q
    |||||||||| |||| ||||| |||||||| |||||||||||||||||| ||||||| ||  || | |||||||||||||||    
T  27475392 ttaaatatgtttttggtccctacattttgcgcgattttgagaatagtccctacatttcaatgaa-tgtttttaaaatcccta 27475472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 34950275 - 34950187
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| | |||||||| |||||||||| |||||||||||||| || ||| | ||||||||||||||| ||||||    
T  34950275 ttaaatatgtttttggtccctacgttttgcacaattttgagaattagtccttacatttcaataaa-tgtttttaaaatccctacattttt 34950187  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 42606798 - 42606711
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| ||||||   | |||||||||||||||| ||||||| || ||| ||||||||||||||||| ||||||    
T  42606798 ttaaatatgtttttggtccctacattttatgcaattttgagaatagtccctacatttcaataaa-tatttttaaaatccctacattttt 42606711  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 248
Target Start/End: Original strand, 45539203 - 45539298
Alignment:
Q  152 ataaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    ||||||| |||| ||||| |||| ||||| |||||| | ||||||| |||||||||| ||||||| || ||||  ||||||||||||||| ||||||    
T  45539203 ataaagggttaattatgtttttggtccctacattttacgcgattttaagaatagtccctacatttcaataaatg-tttttaaaatccctacattttt 45539298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 46690200 - 46690113
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| ||||| |||||| | |||||||||||||| ||| ||||||| || ||| | ||||||||||||||| ||||||    
T  46690200 ttaaatatgtttttggtccctacattttacgcgattttgagaataatccctacatttcaataaa-tgtttttaaaatccctacattttt 46690113  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 46689678 - 46689776
Alignment:
Q  154 aaaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    ||||| |||||||||| |||| | ||| ||||||   |||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||||| ||||    
T  46689678 aaagggttaaatatgtttttggttcctacattttatgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccctacatttttcctcc 46689776  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 2389150 - 2389063
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| |||||  |||||   | |||||||||||||||| |||||||||| ||| | ||||||||||||||| ||||||    
T  2389150 ttaaatatgtttttggtccctatattttatgcaattttgagaatagtccctacattttaataaa-tgtttttaaaatccctacattttt 2389063  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 36899772 - 36899685
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| |||||  |||||   | |||||||||||||||| ||||||| || ||||  ||||||||||||||||||||||    
T  36899772 ttaaatatgtttttggtccctatattttatgcaattttgagaatagtccctacatttcaataaatg-tttttaaaatccctatattttt 36899685  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 51587571 - 51587620
Alignment:
Q  199 agaatagtccttacattttaaaaaattatttttaaaatccctatatttttt 249  Q
    ||||||||| |||||||| || |||| ||||||||||||||||||||||||    
T  51587571 agaatagtcattacatttcaataaat-atttttaaaatccctatatttttt 51587620  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 54589624 - 54589570
Alignment:
Q  199 agaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||||||||| || |||| |||||| ||||||||||||||||| |||||| ||||    
T  54589624 agaatagtccctatatttcaaaaaaatatttttaaaatccctacatttttcctcc 54589570  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 27475817 - 27475729
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttgagaa-tagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||||||||| |||| |||||   |||| |||||||||||||| ||||||||| |||| || ||| | ||||||||||||||| ||||||    
T  27475817 ttaaatatgtttttggtccctaagttttacacgattttgagaattagtccttatatttcaataaa-tgtttttaaaatccctacattttt 27475729  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 27013584 - 27013644
Alignment:
Q  160 ttaaatatgtatttgctccctgcattttgcacgattttga-gaatagtccttacattttaa 219  Q
    |||||||||| |||| ||| | ||||||||  |||||||| ||||||||||||||||||||    
T  27013584 ttaaatatgtttttggtccttacattttgcgtgattttgaagaatagtccttacattttaa 27013644  T

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Target: scaffold0085 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 39944 - 39847
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttttctcc 253  Q
    |||| |||||||||| |||| ||||| |||||| | |||||||||||||||||| ||||||| || ||| | |||||||||||| || |||||| ||||    
T  39944 aagggttaaatatgtttttggtccctacattttacgcgattttgagaatagtccctacatttcaataaa-tgtttttaaaatccttacatttttcctcc 39847  T

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Target: scaffold0085; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 39418 - 39510
Alignment:
Q  155 aaggattaaatatgtatttgctccctgcattttgcacgattttgagaatagtccttacattttaaaaaattatttttaaaatccctatattttt 248  Q
    |||| |||||||||| |||| ||||| ||||||   |||||||||||||| ||| ||||||| || ||| | ||||||||||||||| ||||||    
T  39418 aagggttaaatatgtttttggtccctacattttatgcgattttgagaataatccctacatttcaataaa-tgtttttaaaatccctacattttt 39510  T

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