View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4265_low_7 (Length: 407)
Name: NF4265_low_7
Description: NF4265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4265_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 40869855 - 40870236
Alignment:
| Q |
18 |
accaatgtcacagacaaaactataagggtatatttcctgattcatattttccttcctaaaattgatgtaggataaaaaacattagttccacttgtaaagg |
117 |
Q |
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| T |
40869855 |
accaatgtcactgacaaaactataagggtatatttcctgattcatattttccttcccaaaattgatgtaggataaaaaacattagttccacttgtaaagg |
40869954 |
T |
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| Q |
118 |
aagttccatatcaagaataaacaaaaaattaaaggtccacatcaaaggttaaactgtttccccctctttgtttattatcaaaaacctcataaaattttgt |
217 |
Q |
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| T |
40869955 |
aagttccatatcaagaataaacaaaaaattaaaggtccacatcaaaggttaaactgtttccccctctttgtttattatcaaaaacctcataaaattttgt |
40870054 |
T |
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| Q |
218 |
ccccaagtaaactccccaatcaaccaagtaatcaccattttttagtaccatgatgcctcaaaatctctttatataaatcaactgtgtagtcataatcttt |
317 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870055 |
ccccaagtaaactccccaatcaactaagtaatcacca-tttttagtaacatgatgcctcaaaatctctttatataaatcaactgtgtagtcataatcttt |
40870153 |
T |
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| Q |
318 |
tcatgagcagatcaccaaccctgcctctaattttcttgccatcatcactctgtatggctcctctcttctctcttttcttctca |
400 |
Q |
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| T |
40870154 |
tcatgagcagatcaccaaccctgcctctaattttcttgccatcatcactctgtatggctcctctcttctctcttttcttctca |
40870236 |
T |
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