View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4266-Insertion-1 (Length: 123)
Name: NF4266-Insertion-1
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266-Insertion-1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 8e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 11517997 - 11517878
Alignment:
| Q |
4 |
acatactctgtgagtagaacttgttcaaatagcaccttgagaaattctagtccacgttttattttcaaaagatttctggaatggctcccttgttttctta |
103 |
Q |
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| T |
11517997 |
acatactctgtgagtagaacttgttcaaatagcaccttgagaaattctagtccacgttttattttcaaaagatttctggaatggctcccttgttttctta |
11517898 |
T |
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| Q |
104 |
cagaattagtttgtacatct |
123 |
Q |
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| T |
11517897 |
cagaattagtttgtacatct |
11517878 |
T |
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Target: chr5 (Bit Score: 77; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 39747455 - 39747567
Alignment:
| Q |
4 |
acatactctgtgagtagaacttgttcaaatagcaccttgagaaattctagtccacgttttattttcaaaagatttctggaatggctcccttgttttctta |
103 |
Q |
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| T |
39747455 |
acatactgtgtgagttcaacttgttcaaataacaccttgagaaattcaagtccacattttattttcaaaagatttctggaatgactcctttgttttctca |
39747554 |
T |
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| Q |
104 |
cagaattagtttg |
116 |
Q |
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| T |
39747555 |
cagaattagtttg |
39747567 |
T |
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