View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4266-Insertion-2 (Length: 229)
Name: NF4266-Insertion-2
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266-Insertion-2 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 47293427 - 47293211
Alignment:
| Q |
2 |
tatatacatatgacgtgctctctcggcaaatgcctctgtatcagcggtgtggtacttgtaacttgtaagtaccccaacttgtaaattcttcccactcaat |
101 |
Q |
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| T |
47293427 |
tatatacatatgacgtgctctctcggcaaatgcctctgtatcagcggtgtggtacttgtaa-------gtaccccaacttgtaaattcttcccactcaat |
47293335 |
T |
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| Q |
102 |
caatttatacatattctcaagactaaagattcccaggtccactccaattgaaccagttaaggtaagattttctgcaacaataactcctgcgcgcgcccat |
201 |
Q |
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| T |
47293334 |
caatttatacatattctcaagactaaagattcccaggtccactccaattgaaccagttaaggtaagattttctgcaacaataactcct----gcgcccat |
47293239 |
T |
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| Q |
202 |
tgccacgtagtatcctgcgcccattgct |
229 |
Q |
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| T |
47293238 |
tgccacgtagtatcctgcgcccattgct |
47293211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 45878663 - 45878736
Alignment:
| Q |
140 |
ccactccaattgaaccagttaaggtaagattttctgcaacaataactcctgcgcgcgcccattgccacgtagtatcct |
217 |
Q |
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| T |
45878663 |
ccactccaattgaaccagttaaggttagactttctgcaacaatagctcct----gctcccattgccatgtagtatcct |
45878736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 56208877 - 56208915
Alignment:
| Q |
153 |
accagttaaggtaagattttctgcaacaataactcctgc |
191 |
Q |
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| T |
56208877 |
accagttaaggtaagattttctgcaacaataactcctgc |
56208915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 7972399 - 7972492
Alignment:
| Q |
131 |
ttcccaggtccactccaattgaaccagttaaggtaagattttctgcaacaataactcctgcgcgcgcccattgccacgtagtatcctgcgcccattgc |
228 |
Q |
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| T |
7972399 |
ttcccaagtccactccaattgaaccagttaaggtaaggttttctgcaacaataactcct----gcgcccattgccatgtagtatcctgcgctcattgc |
7972492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 7962048 - 7962096
Alignment:
| Q |
138 |
gtccactccaattgaaccagttaaggtaagattttctgcaacaataact |
186 |
Q |
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| T |
7962048 |
gtccaccccaattgaaccagttaaggtaagattttccgcaacaataact |
7962096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 24354117 - 24354076
Alignment:
| Q |
142 |
actccaattgaaccagttaaggtaagattttctgcaacaata |
183 |
Q |
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| T |
24354117 |
actccaattgaaccagttaaggtaagactttctgcaacaata |
24354076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 35802699 - 35802767
Alignment:
| Q |
147 |
aattgaaccagttaaggtaagattttctgcaacaataactcctgcgcgcgcccattgccacgtagtatcctgc |
219 |
Q |
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| T |
35802699 |
aattgaaccagttaaagtaagattttctgctacgatagctcct----gctcccattgccatgtagtatcctgc |
35802767 |
T |
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