View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4266-Insertion-3 (Length: 90)
Name: NF4266-Insertion-3
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266-Insertion-3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 83; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 6e-40
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 3651125 - 3651211
Alignment:
| Q |
4 |
acttggtcgctacgcagtgttggtggaccgtaactccaacgagtttgaggttttggtagagagaaacaatggcagatgcattggttt |
90 |
Q |
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| T |
3651125 |
acttggtcgctacgcagtgttggtggaccgtaactccaatgagtttgaggttttggtagagagaaacaatggcagatgcattggttt |
3651211 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 38467004 - 38466933
Alignment:
| Q |
4 |
acttggtcgctacgcagtgttggtggaccgtaactccaacgagtttgaggttttggtagagagaaacaatgg |
75 |
Q |
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| T |
38467004 |
acttggtcgatatgctatgttggtggaccgtaactacaacgaatttgaggttttggttgagagaaacaatgg |
38466933 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 35349700 - 35349772
Alignment:
| Q |
4 |
acttggtcgctacgcagtgttggtggaccgtaactccaacgagtttgaggttttggtagagagaaacaatggc |
76 |
Q |
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| T |
35349700 |
acttggtcgatatgctatgttggtggactgtaactacaacgaatttgaggttttggttgagcgaaacaatggc |
35349772 |
T |
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