View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4266_high_12 (Length: 367)

Name: NF4266_high_12
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4266_high_12
NF4266_high_12
[»] chr2 (5 HSPs)
chr2 (15-349)||(10547672-10548003)
chr2 (15-76)||(16069268-16069327)
chr2 (15-80)||(31808063-31808126)
chr2 (15-71)||(20539693-20539747)
chr2 (15-71)||(30404869-30404923)
[»] chr1 (12 HSPs)
chr1 (13-85)||(13997867-13997937)
chr1 (15-85)||(52903235-52903303)
chr1 (11-77)||(5944263-5944329)
chr1 (11-78)||(16927197-16927262)
chr1 (18-78)||(48148049-48148108)
chr1 (15-77)||(398778-398838)
chr1 (20-78)||(34257922-34257978)
chr1 (11-79)||(5898277-5898343)
chr1 (15-76)||(9033021-9033081)
chr1 (15-78)||(2896133-2896194)
chr1 (12-68)||(31694732-31694788)
chr1 (14-77)||(36878446-36878507)
[»] chr7 (1 HSPs)
chr7 (11-85)||(5235968-5236040)
[»] chr3 (6 HSPs)
chr3 (15-85)||(40993340-40993409)
chr3 (16-80)||(4466610-4466672)
chr3 (11-75)||(11610503-11610565)
chr3 (15-70)||(23870579-23870632)
chr3 (16-85)||(38731205-38731272)
chr3 (15-71)||(15796313-15796367)
[»] chr6 (8 HSPs)
chr6 (20-80)||(8101074-8101134)
chr6 (15-85)||(3398605-3398672)
chr6 (15-78)||(9658865-9658926)
chr6 (21-71)||(8713971-8714020)
chr6 (13-75)||(24645464-24645525)
chr6 (11-79)||(677819-677885)
chr6 (15-71)||(5970127-5970181)
chr6 (17-77)||(17341677-17341735)
[»] chr8 (6 HSPs)
chr8 (15-85)||(4786343-4786411)
chr8 (15-80)||(2542434-2542499)
chr8 (15-69)||(41838144-41838196)
chr8 (15-80)||(34897071-34897134)
chr8 (11-71)||(4673444-4673502)
chr8 (15-71)||(29519181-29519235)
[»] chr5 (3 HSPs)
chr5 (11-80)||(42488063-42488130)
chr5 (15-68)||(15382463-15382516)
chr5 (37-77)||(25888306-25888346)
[»] chr4 (9 HSPs)
chr4 (15-69)||(11651155-11651207)
chr4 (14-83)||(21539874-21539941)
chr4 (15-80)||(22440610-22440673)
chr4 (29-71)||(49041880-49041922)
chr4 (15-83)||(903908-903974)
chr4 (21-80)||(1213231-1213287)
chr4 (15-71)||(27706196-27706250)
chr4 (15-79)||(40179647-40179709)
chr4 (30-85)||(6863154-6863207)
[»] scaffold0171 (1 HSPs)
scaffold0171 (11-77)||(23492-23557)
[»] scaffold0136 (1 HSPs)
scaffold0136 (11-71)||(3868-3926)
[»] scaffold0022 (1 HSPs)
scaffold0022 (11-78)||(90825-90890)
[»] scaffold0019 (1 HSPs)
scaffold0019 (15-71)||(71709-71765)


Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 10548003 - 10547672
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcggctggaacacgtctaattcgagaattatcc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  10548003 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcggctggaacacgtctaatttgagaattgtcc 10547904  T
Q  115 gtaattaagaggtggcaggagacattggttactttttgtttggttgtaaaacaagtaatttgcaatgcgtgcaagtagagagcgaaacggggaaaagaaa 214  Q
    ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10547903 gtatttcagaggtggcaggagacattggttactttttgtttggttgtaaaacaagtaatttgcaatgcgtgcaagtagagagcgaaacggggaaaagaaa 10547804  T
Q  215 gtaatgcgagatttaactgcaagggttttagccccgttctattctattctatcaaaaccctacaaatcaccatggctcgtttctctttgccgcgcctcct 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10547803 gtaatgcgagatttaactgcaagggttttagccccgttctattctattctatcaaaaccctacaaatcaccatggctcgtttctctttgccgcgcctcct 10547704  T
Q  315 ctactactaccactacaccgtctctcattcttcat 349  Q
    |||   |||||||||||||||||||||||||||||    
T  10547703 cta---ctaccactacaccgtctctcattcttcat 10547672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 16069327 - 16069268
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttat 76  Q
    |||||||||||| ||||||||||||||||||||  |||||||||||||||||||||| ||||    
T  16069327 gacactgacacgccgacaccgttaataatttaa--aaaaatcatataattcagtgtaattat 16069268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 31808063 - 31808126
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 80  Q
    |||||||||||  |||||||| |||||||||||   ||||||| ||||||||||||| ||||||||    
T  31808063 gacactgacacaccgacaccgctaataatttaac--aaaatcacataattcagtgtaattatatgt 31808126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 20539747 - 20539693
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 71  Q
    ||||||||||||||||||| | ||||||||| |  ||||||||||||||| ||||||    
T  20539747 gacactgacacgtcgacacagctaataatttga--aaaaatcatataatttagtgta 20539693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 30404923 - 30404869
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 71  Q
    |||||||||||| |||||| ||||||||||| |  |||||||| |||||||||||||    
T  30404923 gacactgacacgccgacacggttaataatttga--aaaaatcacataattcagtgta 30404869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 13997867 - 13997937
Alignment:
Q  13 cagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 85  Q
    |||||||||||||| ||||||||||||| ||||||  |||||||| ||||||||||||| |||||||| ||||    
T  13997867 cagacactgacacgccgacaccgttaattatttaa--aaaaatcacataattcagtgtaattatatgtgtcgg 13997937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 52903235 - 52903303
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 85  Q
    |||||| ||||| ||| ||||||||||||||||   ||||||||||||||||||||| |||||||| ||||    
T  52903235 gacactaacacgccgataccgttaataatttaat--aaaatcatataattcagtgtaattatatgtgtcgg 52903303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 5944263 - 5944329
Alignment:
Q  11 cacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttata 77  Q
    |||||||||||||||| || ||| | ||||||||| || |||||||| ||||||||||||| |||||    
T  5944263 cacagacactgacacgccgccacagctaataatttgaaaaaaaatcacataattcagtgtaattata 5944329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 16927262 - 16927197
Alignment:
Q  11 cacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatat 78  Q
    ||||||||||||||||||| ||  | ||||||||| ||  ||||||||||||||||||||| ||||||    
T  16927262 cacagacactgacacgtcggcatagctaataatttgaa--aaaatcatataattcagtgtaattatat 16927197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 48148108 - 48148049
Alignment:
Q  18 actgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatat 78  Q
    ||||||| || ||||||| ||||||||| || |||||||||||||||||||||| ||||||    
T  48148108 actgacatgttgacaccgctaataattttaa-aaaaatcatataattcagtgtaattatat 48148049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 398838 - 398778
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttata 77  Q
    |||||||||||| |||||||| ||||||||| |  |||||||| ||||||||||||| |||||    
T  398838 gacactgacacgccgacaccgctaataatttga--aaaaatcacataattcagtgtaattata 398778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 34257978 - 34257922
Alignment:
Q  20 tgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatat 78  Q
    ||||||||||||||||||||||||||||   ||||||| |||||| |||||| ||||||    
T  34257978 tgacacgtcgacaccgttaataatttaa--taaaatcacataatttagtgtaattatat 34257922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 5898343 - 5898277
Alignment:
Q  11 cacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatg 79  Q
    |||||||||||| ||| |||||||| ||||||| | ||  ||||||| ||||||||||||| |||||||    
T  5898343 cacagacactgagacgccgacaccgctaataatctgaa--aaaatcacataattcagtgtaattatatg 5898277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 9033081 - 9033021
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttat 76  Q
    |||||||||||||| |||||  ||||||||| || |||||||| ||||||||||||| ||||    
T  9033081 gacactgacacgtcaacaccactaataatttgaa-aaaaatcacataattcagtgtaattat 9033021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 2896194 - 2896133
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatat 78  Q
    |||||||||||| |||||||| ||||||||| |   ||||||| |||||||||||||| |||||    
T  2896194 gacactgacacgccgacaccgctaataatttga--gaaaatcacataattcagtgtagctatat 2896133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 31694788 - 31694732
Alignment:
Q  12 acagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagt 68  Q
    ||||||||||| |||||||||  | ||||||||| || |||||||| ||||||||||    
T  31694788 acagacactgatacgtcgacatagctaataatttgaaaaaaaatcacataattcagt 31694732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 36878446 - 36878507
Alignment:
Q  14 agacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttata 77  Q
    ||||||||||||| |||||||| ||||||||| |   ||||||| ||||||||||||| |||||    
T  36878446 agacactgacacgccgacaccgctaataatttga--gaaaatcacataattcagtgtaattata 36878507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 5235968 - 5236040
Alignment:
Q  11 cacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 85  Q
    ||||||||||||||||||||||||| |||||||||||   ||||| |||||||| |||||| |||||| ||||||    
T  5235968 cacagacactgacacgtcgacaccgctaataatttaa--gaaaattatataatttagtgtaattatatatatcgg 5236040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 40993409 - 40993340
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 85  Q
    ||||| ||||| ||||||||| |||||||||||| |||||||| ||||||||||||| |||||||| ||||    
T  40993409 gacacggacacctcgacaccgctaataatttaaa-aaaaatcacataattcagtgtaattatatgtgtcgg 40993340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 4466672 - 4466610
Alignment:
Q  16 acactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 80  Q
    ||||||||||  |||||||| |||||||||||   |||||||||||||||||||||| |||||||    
T  4466672 acactgacactccgacaccggtaataatttaag--aaaatcatataattcagtgtagctatatgt 4466610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 11610503 - 11610565
Alignment:
Q  11 cacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagtta 75  Q
    |||||| ||||||||| | |||||| |||||||||||  |||||||| |||||||||||||||||    
T  11610503 cacagatactgacacgccaacaccgctaataatttaa--aaaaatcacataattcagtgtagtta 11610565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 23870632 - 23870579
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgt 70  Q
    ||||| ||||||||||||||| ||||||||| |  |||||||||||||||||||||    
T  23870632 gacacggacacgtcgacaccgctaataatttga--aaaaatcatataattcagtgt 23870579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 38731205 - 38731272
Alignment:
Q  16 acactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 85  Q
    |||| |||| ||||| |||| ||||||||| ||  ||||||| |||||||||||||||||||||| ||||    
T  38731205 acaccgacatgtcgataccgctaataattttaa--aaaatcacataattcagtgtagttatatgtgtcgg 38731272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 15796367 - 15796313
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 71  Q
    |||| ||||||| |||||| ||||||||||| ||  |||||||||||||||||||||    
T  15796367 gacaatgacacgccgacacagttaataatttgaa--aaaatcatataattcagtgta 15796313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 8101074 - 8101134
Alignment:
Q  20 tgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 80  Q
    |||||||||||| |  ||||||||||||| |||||||||||||| ||||||| ||||||||    
T  8101074 tgacacgtcgactctattaataatttaaaaaaaaatcatataatccagtgtaattatatgt 8101134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 3398605 - 3398672
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 85  Q
    |||||||||||| |||||| | ||||||||| ||   |||||||||||||||||||| ||||| |||||||    
T  3398605 gacactgacacgccgacacagctaataatttgaa---aaatcatataattcagtgtaattataagtatcgg 3398672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 9658865 - 9658926
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatat 78  Q
    |||||||||||| |||||||| |||||||||||   ||||||| ||||||||||||| ||||||    
T  9658865 gacactgacacgccgacaccgctaataatttaa--gaaaatcacataattcagtgtaattatat 9658926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 8713971 - 8714020
Alignment:
Q  21 gacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 71  Q
    ||||||||||||| ||||||||||| || |||||||| |||||||||||||    
T  8713971 gacacgtcgacacagttaataatttgaa-aaaaatcacataattcagtgta 8714020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 24645464 - 24645525
Alignment:
Q  13 cagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagtta 75  Q
    |||||||||||| |||||||| | ||||||||| || |||||||| |||||||||| ||||||    
T  24645464 cagacactgacatgtcgacacagctaataatttgaa-aaaaatcacataattcagtatagtta 24645525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 677819 - 677885
Alignment:
Q  11 cacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatg 79  Q
    |||||||||||||||| |||||| ||||||||||| |   |||||||||||||  |||||| |||||||    
T  677819 cacagacactgacacgccgacactgttaataatttga--gaaaatcatataatatagtgtatttatatg 677885  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 5970181 - 5970127
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 71  Q
    ||||| ||||||||||||| ||||||||||| |  |||||||| |||||||||||||    
T  5970181 gacacggacacgtcgacacagttaataatttga--aaaaatcacataattcagtgta 5970127  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 17341735 - 17341677
Alignment:
Q  17 cactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttata 77  Q
    |||||||||| |||||||||||||||||| |   ||||||| ||||||||||||| |||||    
T  17341735 cactgacacgccgacaccgttaataatttga--taaaatcacataattcagtgtaattata 17341677  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 4786411 - 4786343
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 85  Q
    |||||||||||| ||||||| ||||||||||||   ||||||| ||||||||||||| |||||||| ||||    
T  4786411 gacactgacacgccgacaccattaataatttaa--gaaaatcacataattcagtgtaattatatgtgtcgg 4786343  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 2542434 - 2542499
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 80  Q
    ||||| |||| ||||||| ||||||||||||||| |||||| | || |||||||||| ||||||||    
T  2542434 gacacggacatgtcgacatcgttaataatttaaaaaaaaattacatgattcagtgtaattatatgt 2542499  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 41838196 - 41838144
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtg 69  Q
    ||||||||||||||||||| | |||||||||||  |||||||| |||||||||||    
T  41838196 gacactgacacgtcgacacagctaataatttaa--aaaaatcacataattcagtg 41838144  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 34897071 - 34897134
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 80  Q
    ||||| ||||||||||||||| ||||||||| |   ||||||| ||||||||||||| ||||||||    
T  34897071 gacacagacacgtcgacaccgctaataatttga--gaaaatcacataattcagtgtaattatatgt 34897134  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 4673502 - 4673444
Alignment:
Q  11 cacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 71  Q
    |||||||||||||||| |||||| | ||||||||| |  |||||||||| |||||||||||    
T  4673502 cacagacactgacacgccgacacagataataatttga--aaaaatcataaaattcagtgta 4673444  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 29519181 - 29519235
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 71  Q
    |||||||||||||| |||||| ||||||||| |  ||||||||||||||||| ||||    
T  29519181 gacactgacacgtcaacaccgataataatttta--aaaaatcatataattcaatgta 29519235  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 42488130 - 42488063
Alignment:
Q  11 cacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 80  Q
    ||||||||||||||||||||||||||| |||||||||   ||||| |||||||||| |||| ||| ||||    
T  42488130 cacagacactgacacgtcgacaccgttgataatttaa--taaaattatataattcaatgtaattacatgt 42488063  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 15382463 - 15382516
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagt 68  Q
    |||| ||||||| |||||| | ||||||||| || |||||||||||||||||||    
T  15382463 gacaatgacacgccgacacagctaataatttgaaaaaaaatcatataattcagt 15382516  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 25888346 - 25888306
Alignment:
Q  37 taataatttaaataaaaatcatataattcagtgtagttata 77  Q
    ||||||||| || |||||||||||||||||||||| |||||    
T  25888346 taataattttaaaaaaaatcatataattcagtgtaattata 25888306  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 11651207 - 11651155
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtg 69  Q
    ||||||||||||||||||| | |||||||||||  |||||||| |||||||||||    
T  11651207 gacactgacacgtcgacacagctaataatttaa--aaaaatcacataattcagtg 11651155  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 21539941 - 21539874
Alignment:
Q  14 agacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatc 83  Q
    ||||||||||| | ||||||| ||||||||||||   |||||||||||||| |||||| |||||| ||||    
T  21539941 agacactgacatgccgacaccattaataatttaa--gaaaatcatataatttagtgtaattatatatatc 21539874  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 22440673 - 22440610
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 80  Q
    |||||||| || ||||||||||||||||||| |   ||||||| ||||||||||||| ||||||||    
T  22440673 gacactgatacatcgacaccgttaataatttga--gaaaatcacataattcagtgtaattatatgt 22440610  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 49041922 - 49041880
Alignment:
Q  29 gacaccgttaataatttaaataaaaatcatataattcagtgta 71  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||    
T  49041922 gacacagttaataaattaaaaaaaaatcatataattcagtgta 49041880  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 903908 - 903974
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatc 83  Q
    |||||||||||  || ||||||||||||||| |   ||||||| ||||||||||||| |||||||||||    
T  903908 gacactgacacaccggcaccgttaataatttgag--aaaatcacataattcagtgtaattatatgtatc 903974  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 1213287 - 1213231
Alignment:
Q  21 gacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatgt 80  Q
    ||||||| ||||| ||||||||||||||   |||| ||||||||||||||| ||||||||    
T  1213287 gacacgttgacactgttaataatttaaa---aaattatataattcagtgtaattatatgt 1213231  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 27706250 - 27706196
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 71  Q
    |||||||||||||||||||  ||||||||||||  |||||||| |||||| ||||||    
T  27706250 gacactgacacgtcgacacaattaataatttaa--aaaaatcacataatttagtgta 27706196  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 40179709 - 40179647
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatatg 79  Q
    ||||||||||||| |||||| |||||| ||| ||  ||||||| ||||||||||||| |||||||    
T  40179709 gacactgacacgttgacaccattaatagtttgaa--aaaatcacataattcagtgtaattatatg 40179647  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 6863154 - 6863207
Alignment:
Q  30 acaccgttaataatttaaataaaaatcatataattcagtgtagttatatgtatcgg 85  Q
    |||||||||||||||| ||  ||||||||||||||| ||| | |||||||||||||    
T  6863154 acaccgttaataatttgaa--aaaatcatataattcggtgcaattatatgtatcgg 6863207  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 23492 - 23557
Alignment:
Q  11 cacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttata 77  Q
    |||| ||||||||||  |||||| |||||||| ||||| |||||||| ||||||||||||| |||||    
T  23492 cacatacactgacacaccgacacagttaataacttaaa-aaaaatcacataattcagtgtaattata 23557  T

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Target: scaffold0136 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 3926 - 3868
Alignment:
Q  11 cacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 71  Q
    |||||||||||| | | |||||| |||||||||||||  |||||||| |||||||||||||    
T  3926 cacagacactgatatgccgacacggttaataatttaa--aaaaatcacataattcagtgta 3868  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 90825 - 90890
Alignment:
Q  11 cacagacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgtagttatat 78  Q
    |||||||||||||||  | ||||| |||||||||| |   ||||||||||||||||||||| ||||||    
T  90825 cacagacactgacacaccaacaccattaataatttgag--aaaatcatataattcagtgtaattatat 90890  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 71709 - 71765
Alignment:
Q  15 gacactgacacgtcgacaccgttaataatttaaataaaaatcatataattcagtgta 71  Q
    |||||||||||| |||||| | ||||||||| || |||||||| | |||||||||||    
T  71709 gacactgacacgccgacacagctaataatttgaaaaaaaatcacacaattcagtgta 71765  T

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