View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4266_high_13 (Length: 358)

Name: NF4266_high_13
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4266_high_13
NF4266_high_13
[»] chr2 (32 HSPs)
chr2 (1-358)||(5699448-5699804)
chr2 (247-333)||(28770878-28770964)
chr2 (245-302)||(2869829-2869886)
chr2 (245-302)||(3277908-3277965)
chr2 (160-203)||(12123434-12123477)
chr2 (256-302)||(8390284-8390330)
chr2 (160-198)||(11151438-11151476)
chr2 (245-302)||(23078606-23078663)
chr2 (231-302)||(14699129-14699198)
chr2 (258-302)||(17865121-17865165)
chr2 (160-200)||(29868154-29868194)
chr2 (160-200)||(39285120-39285160)
chr2 (146-204)||(4561352-4561411)
chr2 (160-198)||(723589-723627)
chr2 (160-198)||(5723098-5723136)
chr2 (160-198)||(6594846-6594884)
chr2 (256-302)||(8039976-8040022)
chr2 (160-198)||(11067588-11067626)
chr2 (256-302)||(20522136-20522182)
chr2 (256-302)||(31055958-31056004)
chr2 (256-302)||(33528756-33528802)
chr2 (160-198)||(34139615-34139653)
chr2 (256-290)||(34388775-34388809)
chr2 (160-198)||(38312528-38312566)
chr2 (160-198)||(45100042-45100080)
chr2 (245-302)||(10445579-10445636)
chr2 (249-290)||(12632466-12632507)
chr2 (160-201)||(13122044-13122085)
chr2 (160-197)||(33162296-33162333)
chr2 (155-196)||(36191098-36191139)
chr2 (256-300)||(33118052-33118096)
chr2 (160-200)||(36987917-36987957)
[»] chr4 (24 HSPs)
chr4 (248-302)||(37781771-37781825)
chr4 (231-302)||(5269326-5269394)
chr4 (252-302)||(10047291-10047341)
chr4 (258-300)||(16630817-16630859)
chr4 (256-302)||(38152573-38152619)
chr4 (160-200)||(48893485-48893525)
chr4 (161-203)||(5207693-5207735)
chr4 (160-198)||(5369924-5369962)
chr4 (160-198)||(5872105-5872143)
chr4 (256-302)||(25862157-25862203)
chr4 (160-198)||(29999671-29999709)
chr4 (160-198)||(37740913-37740951)
chr4 (160-198)||(46147238-46147276)
chr4 (160-198)||(48143336-48143374)
chr4 (160-198)||(56178478-56178516)
chr4 (249-302)||(42599709-42599762)
chr4 (160-200)||(6542029-6542069)
chr4 (160-200)||(9927301-9927341)
chr4 (160-200)||(26175479-26175519)
chr4 (160-200)||(31474432-31474472)
chr4 (160-196)||(34570256-34570292)
chr4 (160-200)||(47038258-47038298)
chr4 (162-198)||(52095206-52095242)
chr4 (256-300)||(54867100-54867144)
[»] chr1 (25 HSPs)
chr1 (123-202)||(37282501-37282581)
chr1 (245-302)||(47704071-47704128)
chr1 (160-200)||(23555113-23555153)
chr1 (161-198)||(10925510-10925547)
chr1 (245-302)||(29651716-29651773)
chr1 (160-200)||(834012-834052)
chr1 (160-200)||(41361196-41361236)
chr1 (252-288)||(48382631-48382667)
chr1 (160-200)||(50167022-50167062)
chr1 (159-198)||(13316193-13316232)
chr1 (256-302)||(775588-775634)
chr1 (160-198)||(3157153-3157191)
chr1 (160-198)||(8550626-8550664)
chr1 (256-302)||(13598314-13598360)
chr1 (146-200)||(15820582-15820636)
chr1 (256-302)||(27104507-27104553)
chr1 (138-192)||(44649992-44650046)
chr1 (160-198)||(49918638-49918676)
chr1 (159-200)||(13659192-13659233)
chr1 (245-302)||(40816867-40816924)
chr1 (160-197)||(45644200-45644237)
chr1 (246-290)||(9023979-9024023)
chr1 (160-200)||(13137823-13137863)
chr1 (160-196)||(31659528-31659564)
chr1 (160-200)||(36683895-36683935)
[»] chr5 (10 HSPs)
chr5 (219-289)||(30899742-30899810)
chr5 (256-302)||(3880216-3880262)
chr5 (256-302)||(12084311-12084357)
chr5 (220-302)||(2630110-2630193)
chr5 (256-290)||(14520145-14520179)
chr5 (256-302)||(19588662-19588708)
chr5 (160-198)||(30682765-30682803)
chr5 (160-198)||(39468391-39468429)
chr5 (160-198)||(42428273-42428311)
chr5 (245-290)||(34842509-34842554)
[»] chr3 (24 HSPs)
chr3 (123-201)||(27305522-27305600)
chr3 (256-302)||(8370612-8370658)
chr3 (256-302)||(27026861-27026907)
chr3 (160-200)||(22834849-22834889)
chr3 (256-299)||(35925398-35925441)
chr3 (165-200)||(44700331-44700366)
chr3 (256-299)||(48438130-48438173)
chr3 (160-202)||(2074924-2074966)
chr3 (160-198)||(7762554-7762592)
chr3 (160-198)||(9635966-9636004)
chr3 (256-302)||(26298904-26298950)
chr3 (260-302)||(27038210-27038252)
chr3 (160-198)||(29813349-29813387)
chr3 (256-302)||(40592908-40592954)
chr3 (160-198)||(40734785-40734823)
chr3 (160-198)||(40735670-40735708)
chr3 (256-290)||(47924009-47924043)
chr3 (159-200)||(16499300-16499341)
chr3 (160-197)||(29196232-29196269)
chr3 (155-203)||(40519107-40519156)
chr3 (160-200)||(21350853-21350893)
chr3 (160-200)||(32891376-32891416)
chr3 (160-200)||(39153207-39153247)
chr3 (160-200)||(51351982-51352022)
[»] chr6 (13 HSPs)
chr6 (245-302)||(22963605-22963662)
chr6 (245-302)||(23824731-23824788)
chr6 (256-302)||(5017603-5017649)
chr6 (258-302)||(18232763-18232807)
chr6 (123-201)||(4045693-4045772)
chr6 (256-302)||(4629869-4629915)
chr6 (160-198)||(5408912-5408950)
chr6 (160-198)||(5413237-5413275)
chr6 (160-198)||(9182873-9182911)
chr6 (256-302)||(10077300-10077346)
chr6 (162-200)||(28137255-28137293)
chr6 (140-190)||(30519238-30519287)
chr6 (160-198)||(31404517-31404555)
[»] chr8 (19 HSPs)
chr8 (245-299)||(5990699-5990753)
chr8 (123-203)||(32901992-32902073)
chr8 (160-200)||(1292311-1292351)
chr8 (160-200)||(12702473-12702513)
chr8 (160-200)||(19491545-19491585)
chr8 (160-200)||(41366460-41366500)
chr8 (245-288)||(7493210-7493253)
chr8 (160-202)||(8154064-8154106)
chr8 (160-198)||(15213074-15213112)
chr8 (256-302)||(26403365-26403411)
chr8 (160-198)||(30143628-30143666)
chr8 (160-198)||(34254173-34254211)
chr8 (163-200)||(1345221-1345258)
chr8 (160-197)||(5689556-5689593)
chr8 (123-203)||(11711808-11711889)
chr8 (163-200)||(40321361-40321398)
chr8 (160-196)||(4733996-4734032)
chr8 (258-302)||(9765955-9765999)
chr8 (160-200)||(43036708-43036748)
[»] chr7 (24 HSPs)
chr7 (160-198)||(29991341-29991379)
chr7 (160-200)||(31105242-31105282)
chr7 (136-202)||(30843302-30843369)
chr7 (256-302)||(55864-55910)
chr7 (256-302)||(4796802-4796848)
chr7 (164-198)||(8153625-8153659)
chr7 (160-198)||(18126934-18126972)
chr7 (256-302)||(20284005-20284051)
chr7 (160-202)||(23344249-23344291)
chr7 (160-198)||(23555329-23555367)
chr7 (163-197)||(24525351-24525385)
chr7 (160-198)||(25766799-25766837)
chr7 (256-302)||(29159719-29159765)
chr7 (160-198)||(35854204-35854242)
chr7 (160-198)||(47675979-47676017)
chr7 (160-198)||(48489719-48489757)
chr7 (256-302)||(49091578-49091624)
chr7 (163-200)||(495833-495870)
chr7 (245-302)||(2647831-2647888)
chr7 (133-202)||(23564884-23564953)
chr7 (160-197)||(36146254-36146291)
chr7 (245-302)||(46516445-46516502)
chr7 (258-290)||(9190155-9190187)
chr7 (160-200)||(19502464-19502504)
[»] scaffold0148 (1 HSPs)
scaffold0148 (245-302)||(10634-10691)
[»] scaffold0076 (1 HSPs)
scaffold0076 (245-302)||(16124-16181)
[»] scaffold1668 (1 HSPs)
scaffold1668 (160-198)||(1344-1382)
[»] scaffold0006 (3 HSPs)
scaffold0006 (256-302)||(2408-2454)
scaffold0006 (256-302)||(5599-5645)
scaffold0006 (159-200)||(148953-148994)


Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 5699448 - 5699804
Alignment:
Q  1 tcaatatgtgaaagtaatgatattatttgataatcgatttcatgcattatttgagctatctttgatgaaggaatgataatagttttagttttttgtcgat 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  5699448 tcaatatgtgaaagtaatgatattatttgataattgatttcatgcattatttgagctatctttgatgaaggaatgataatagttttagtttta-gtcgat 5699546  T
Q  101 ttggataatggaggtgtttaggtgtgtatttggactcaaaatcataccaatattcttaaatgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||||||| ||||||||||||| |||||||    
T  5699547 ttggataatggaggtgtttaggtgtgtatttggactcaaaatcatatcaataattttaaatgtttggagcaaagaaaaatagtaatcaatattaaagtaa 5699646  T
Q  201 cctttgtcnnnnnnntatcaaagtaaccttaagcaacaacaagtcaacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaag 300  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5699647 cctttgtcaaaaaaatatcaaagtaaccttaagcaacaacaagtcaacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaag 5699746  T
Q  301 cagcaaccataagatagaagagaaaagaaacaaacacacaagaaatattttcttgatt 358  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5699747 cagcaacgataagataaaagagaaaagaaacaaacacacaagaaatattttcttgatt 5699804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 247 - 333
Target Start/End: Complemental strand, 28770964 - 28770878
Alignment:
Q  247 acaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagcagcaaccataagatagaagagaaaagaaacaa 333  Q
    ||||||||||||||||||||||||||| |||||||||||||||| || ||||||||  ||  |||| | |||||||||| |||||||    
T  28770964 acaacaaatagacctagatctaagtgtgaagcaacaccacaagcataatcaaagcaaaaaatataataaagaagagaaaggaaacaa 28770878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 2869886 - 2869829
Alignment:
Q  245 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||| |||||||||||    
T  2869886 caacaacaaatagacctaaatctaagtgtagagcaacaccataagcatattcaaagca 2869829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 3277908 - 3277965
Alignment:
Q  245 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||||||||||| |||||||||||||| ||||||||| |||| | |||||||||||    
T  3277908 caacaacaaatagatctagatctaagtgtgaagcaacactacaaacatattcaaagca 3277965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 12123434 - 12123477
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaacct 203  Q
    ||||||||||||||| |||||||||| |||||||||||||||||    
T  12123434 atgtgtggagcaaaggaaagtagtaaccaatatcaaagtaacct 12123477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 8390330 - 8390284
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  8390330 agacctagatctaagtgtagagcaacaccacaagcataatcaaagca 8390284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 11151438 - 11151476
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  11151438 atgtgtggagcaaataaaagtagtaatcaatatcaaagt 11151476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 23078663 - 23078606
Alignment:
Q  245 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||| ||| | ||||||||||||||||| ||||||||||||||| || ||||||||    
T  23078663 caacaaaaaacatacctagatctaagtgtagagcaacaccacaagcataatcaaagca 23078606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 14699198 - 14699129
Alignment:
Q  231 aagcaacaacaagtcaacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||||||||  |||||| ||  ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  14699198 aagcaacaacaa--caacaaaaagcagacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 14699129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 17865121 - 17865165
Alignment:
Q  258 acctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||    
T  17865121 acctagatctaagtgtagagcaacaccacaagcataatcaaagca 17865165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 29868194 - 29868154
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  29868194 atgtgtggagcaaagaaaagtagtaatcaattttaaagtaa 29868154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 39285160 - 39285120
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  39285160 atgtgtggagcaaagaaaagtagtaaccaatttcaaagtaa 39285120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 4561411 - 4561352
Alignment:
Q  146 accaatattcttaaatgtgtggagcaaa-gaaaagtagtaatcaatatcaaagtaacctt 204  Q
    |||||||  |||| ||||||||| |||| |||||||||||| ||||||||||||||||||    
T  4561411 accaataaacttagatgtgtggaacaaaagaaaagtagtaaccaatatcaaagtaacctt 4561352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 723589 - 723627
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  723589 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 723627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 5723098 - 5723136
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  5723098 atgtgtggagcaaagtaaagtagtaaccaatatcaaagt 5723136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 6594846 - 6594884
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  6594846 atgtgtggagcaaagtaaagtagtaaccaatatcaaagt 6594884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 8039976 - 8040022
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  8039976 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 8040022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 11067626 - 11067588
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  11067626 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 11067588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 20522136 - 20522182
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||| |||||||||||||| ||||||||||||||| || ||||||||    
T  20522136 agacatagatctaagtgtagagcaacaccacaagcataatcaaagca 20522182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 31055958 - 31056004
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  31055958 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 31056004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 33528802 - 33528756
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||||||||||| |||| ||||||||||||||| || ||||||||    
T  33528802 agacctagatctaaatgtagagcaacaccacaagcataatcaaagca 33528756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 34139615 - 34139653
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  34139615 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 34139653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 34388775 - 34388809
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagc 290  Q
    ||||||||||||||||||| |||||||||||||||    
T  34388775 agacctagatctaagtgtagagcaacaccacaagc 34388809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 38312566 - 38312528
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  38312566 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 38312528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 45100080 - 45100042
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  45100080 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 45100042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 10445636 - 10445579
Alignment:
Q  245 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||| ||| ||||||| ||||||||||| ||||| ||||||||| || ||||||||    
T  10445636 caacaaaaaacagacctaaatctaagtgtagagcaaaaccacaagcataatcaaagca 10445579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 12632466 - 12632507
Alignment:
Q  249 aacaaatagacctagatctaagtgtaaagcaacaccacaagc 290  Q
    |||||| |||||||||| ||||||| ||||||||||||||||    
T  12632466 aacaaacagacctagatataagtgtcaagcaacaccacaagc 12632507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 13122085 - 13122044
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaac 201  Q
    |||||||||| ||||||||||| |||||||||||||| ||||    
T  13122085 atgtgtggagtaaagaaaagtactaatcaatatcaaaataac 13122044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 33162296 - 33162333
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaag 197  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  33162296 atgtgtggagcaaaggaaagtagtaaccaatatcaaag 33162333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 36191098 - 36191139
Alignment:
Q  155 cttaaatgtgtggagcaaagaaaagtagtaatcaatatcaaa 196  Q
    ||||||||||||||||||||||||  ||||| ||||||||||    
T  36191098 cttaaatgtgtggagcaaagaaaatcagtaaccaatatcaaa 36191139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 33118052 - 33118096
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaag 300  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||    
T  33118052 agacctaaatctaagtgtagagcaacaccacaagcataatcaaag 33118096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 36987917 - 36987957
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||||||| |||| |||||||||    
T  36987917 atgtgtggagcaaaggaaagtagtaaccaatttcaaagtaa 36987957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 37781771 - 37781825
Alignment:
Q  248 caacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  37781771 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagca 37781825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 5269394 - 5269326
Alignment:
Q  231 aagcaacaacaagtcaacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||||||||  |||||| ||||| ||||||||||||||||| ||||||||||||||| || ||||||||    
T  5269394 aagcaacaacaa--caacaa-aaatatacctagatctaagtgtagagcaacaccacaagcataatcaaagca 5269326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 10047291 - 10047341
Alignment:
Q  252 aaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||||| |||||||||||||| ||||||||||||||| || ||||||||    
T  10047291 aaatagacatagatctaagtgtagagcaacaccacaagcataatcaaagca 10047341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 300
Target Start/End: Complemental strand, 16630859 - 16630817
Alignment:
Q  258 acctagatctaagtgtaaagcaacaccacaagcttattcaaag 300  Q
    ||||||||||||||||||||||||||||||||| || ||||||    
T  16630859 acctagatctaagtgtaaagcaacaccacaagcataatcaaag 16630817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 38152619 - 38152573
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  38152619 agacctagatctaagtgtatagcaacaccacaagcataatcaaagca 38152573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 48893485 - 48893525
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  48893485 atgtgtggagcaaaggaaagtagtaaccaatatcaaagtaa 48893525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 5207693 - 5207735
Alignment:
Q  161 tgtgtggagcaaagaaaagtagtaatcaatatcaaagtaacct 203  Q
    |||||||||||||| |||||||||||  |||||||||||||||    
T  5207693 tgtgtggagcaaaggaaagtagtaattgatatcaaagtaacct 5207735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 5369924 - 5369962
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  5369924 atgtgtggagtaaaggaaagtagtaatcaatatcaaagt 5369962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 5872143 - 5872105
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  5872143 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 5872105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 25862203 - 25862157
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  25862203 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 25862157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 29999671 - 29999709
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  29999671 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 29999709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 37740951 - 37740913
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    |||||||||||| || |||||||||||||||||||||||    
T  37740951 atgtgtggagcacaggaaagtagtaatcaatatcaaagt 37740913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 46147238 - 46147276
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  46147238 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 46147276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 48143374 - 48143336
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  48143374 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 48143336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 56178478 - 56178516
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  56178478 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 56178516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 42599762 - 42599709
Alignment:
Q  249 aacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||| | |||||||||||| |||| ||||||||||||||| || ||||||||    
T  42599762 aacaaacaaacctagatctaaatgtagagcaacaccacaagcataatcaaagca 42599709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 6542029 - 6542069
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||| ||| ||||||||||||||    
T  6542029 atgtgtggagcaaaggaaagtaataaccaatatcaaagtaa 6542069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 9927301 - 9927341
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||||| | ||||||||||||||    
T  9927301 atgtgtggagcaaaggaaagtagttaccaatatcaaagtaa 9927341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 26175479 - 26175519
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||||||| |||| |||||||||    
T  26175479 atgtgtggagcaaaggaaagtagtaaccaatttcaaagtaa 26175519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 31474472 - 31474432
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||| ||||||  |||||||||||||||||||||||||    
T  31474472 atgtgtgtagcaaatgaaagtagtaatcaatatcaaagtaa 31474432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 34570256 - 34570292
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaa 196  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  34570256 atgtgtggagcaaaggaaagtagtaaccaatatcaaa 34570292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 47038258 - 47038298
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||| ||||| |||||||||| ||||||||||||||    
T  47038258 atgtgtggaacaaaggaaagtagtaaccaatatcaaagtaa 47038298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 52095206 - 52095242
Alignment:
Q  162 gtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  52095206 gtgtggaacaaaggaaagtagtaatcaatatcaaagt 52095242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 54867100 - 54867144
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaag 300  Q
    |||| |||||||||||||| ||||||||||||||| || ||||||    
T  54867100 agacatagatctaagtgtagagcaacaccacaagcataatcaaag 54867144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 37282501 - 37282581
Alignment:
Q  123 tgtgtatttggactcaaaatcataccaatattcttaaatgtgtggagc-aaagaaaagtagtaatcaatatcaaagtaacc 202  Q
    |||| ||| ||||||||||||| |||||||  |||||||||||||||| ||||||||||| |||| ||||| |||||||||    
T  37282501 tgtgaattcggactcaaaatcacaccaataaacttaaatgtgtggagcaaaagaaaagtaataattaatatgaaagtaacc 37282581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 47704128 - 47704071
Alignment:
Q  245 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||| ||| ||||||||    
T  47704128 caacaaaaaatagacctaaatctaagtgtagagcaacaccacaagtttaatcaaagca 47704071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 23555113 - 23555153
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  23555113 atgtgtggagcaaagaaaagtagtaatcaatgtcaaagtaa 23555153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 10925547 - 10925510
Alignment:
Q  161 tgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10925547 tgtgtggagcaaaggaaagtagtaatcaatatcaaagt 10925510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 29651716 - 29651773
Alignment:
Q  245 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||| ||| |||| |||||||||||||| ||||||||||||||| || ||||||||    
T  29651716 caacaaaaaacagacttagatctaagtgtagagcaacaccacaagcataatcaaagca 29651773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 834012 - 834052
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  834012 atgtgtggagcaaaggaaagtagtaaccaatatcaaagtaa 834052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 41361236 - 41361196
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  41361236 atgtgtggagcaaaggaaagtattaatcaatatcaaagtaa 41361196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 48382667 - 48382631
Alignment:
Q  252 aaatagacctagatctaagtgtaaagcaacaccacaa 288  Q
    |||||||||||||||||||||| ||||||||||||||    
T  48382667 aaatagacctagatctaagtgtgaagcaacaccacaa 48382631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 50167022 - 50167062
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  50167022 atgtgtggagcaaaggaaagtagtaaccaatatcaaagtaa 50167062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 13316193 - 13316232
Alignment:
Q  159 aatgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  13316193 aatgtgtggagcaaaggaaagtagtaatcaataacaaagt 13316232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 775588 - 775634
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  775588 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 775634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 3157191 - 3157153
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  3157191 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 3157153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 8550626 - 8550664
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  8550626 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 8550664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 13598314 - 13598360
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||||||||||||||| || |||||||||||| || ||||||||    
T  13598314 agacctagatctaagtgtagagaaacaccacaagcataatcaaagca 13598360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 15820636 - 15820582
Alignment:
Q  146 accaatattcttaaatgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    |||||||  |||| ||||||||||||||| ||||||||||  |||||||||||||    
T  15820636 accaataaacttagatgtgtggagcaaaggaaagtagtaactaatatcaaagtaa 15820582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 27104553 - 27104507
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  27104553 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 27104507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 44649992 - 44650046
Alignment:
Q  138 aaaatcataccaatattcttaaatgtgtggagcaaagaaaagtagtaatcaatat 192  Q
    |||||||| ||||||  |||| ||||||| |||||||||||||||||| ||||||    
T  44649992 aaaatcattccaataaacttagatgtgtgtagcaaagaaaagtagtaaccaatat 44650046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 49918676 - 49918638
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  49918676 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 49918638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 13659192 - 13659233
Alignment:
Q  159 aatgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    |||||||||||||||| |||||||||| ||| ||||||||||    
T  13659192 aatgtgtggagcaaaggaaagtagtaaccaacatcaaagtaa 13659233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 40816924 - 40816867
Alignment:
Q  245 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||| ||| ||||||| ||||||||||| ||||||||||| ||| || ||||||||    
T  40816924 caacaaaaaacagacctaaatctaagtgtagagcaacaccacgagcataatcaaagca 40816867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 45644200 - 45644237
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaag 197  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  45644200 atgtgtggagcaaaggaaagtagtaaccaatatcaaag 45644237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 9024023 - 9023979
Alignment:
Q  246 aacaacaaatagacctagatctaagtgtaaagcaacaccacaagc 290  Q
    ||||||||| | ||||| ||||||||||| |||||||||||||||    
T  9024023 aacaacaaacatacctaaatctaagtgtatagcaacaccacaagc 9023979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 13137823 - 13137863
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||||||| |||| |||||||||    
T  13137823 atgtgtggagcaaaggaaagtagtaaccaatttcaaagtaa 13137863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 31659564 - 31659528
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaa 196  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  31659564 atgtgtggagaaaagaaaagtagtaaccaatatcaaa 31659528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 36683935 - 36683895
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| ||||| |||| ||||||||||||||    
T  36683935 atgtgtggagcaaaggaaagtggtaaccaatatcaaagtaa 36683895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 30899742 - 30899810
Alignment:
Q  219 caaagtaaccttaagcaacaacaagtcaacaacaaatagacctagatctaagtgtaaagcaacaccacaag 289  Q
    ||||||| ||| ||||||||||||  |||||||| ||||||||||||| |||||| |||||||||||||||    
T  30899742 caaagtagcctcaagcaacaacaa--caacaacacatagacctagatcaaagtgttaagcaacaccacaag 30899810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 3880216 - 3880262
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||    
T  3880216 agacctaaatctaagtgtaaagcaacaccacaagcataatcaaagca 3880262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 12084357 - 12084311
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  12084357 agacctagatctaagtgtagagcaacaccacaagcataatcaaagca 12084311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 302
Target Start/End: Original strand, 2630110 - 2630193
Alignment:
Q  220 aaagtaaccttaagcaacaacaagt-caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||| ||| ||||||||||||   ||| ||||||||| |||| ||||||||| | ||||||||||||||| |||| ||||||    
T  2630110 aaagtagcctcaagcaacaacaacaacaaaaacaaataggcctaaatctaagtgcagagcaacaccacaagcatatttaaagca 2630193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 14520145 - 14520179
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagc 290  Q
    ||||||||||||||||||| |||||||||||||||    
T  14520145 agacctagatctaagtgtagagcaacaccacaagc 14520179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 19588662 - 19588708
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  19588662 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 19588708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 30682765 - 30682803
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  30682765 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 30682803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 39468391 - 39468429
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  39468391 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 39468429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 42428273 - 42428311
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  42428273 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 42428311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 34842509 - 34842554
Alignment:
Q  245 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagc 290  Q
    |||||| ||| | |||||||||||||||| ||||||||||||||||    
T  34842509 caacaataaacaaacctagatctaagtgtgaagcaacaccacaagc 34842554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 27305522 - 27305600
Alignment:
Q  123 tgtgtatttggactcaaaatcataccaatattcttaaatgtgtggagcaaagaaaagtagtaatcaatatcaaagtaac 201  Q
    |||| ||| ||||||||||||| |||||||  ||   ||||||||||||||| |||||||||| |||||||||||||||    
T  27305522 tgtgaattcggactcaaaatcacaccaataaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtaac 27305600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 8370658 - 8370612
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  8370658 agacctagatctaagtgtagagcaacaccacaagcataatcaaagca 8370612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 27026861 - 27026907
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  27026861 agacctagatctaagtgtagagcaacaccacaagcataatcaaagca 27026907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 22834849 - 22834889
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  22834849 atgtgtggagcaaaggaaagtagtaaccaatatcaaagtaa 22834889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 35925398 - 35925441
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaa 299  Q
    ||||||||||||||||||| ||||||||||||||| || |||||    
T  35925398 agacctagatctaagtgtagagcaacaccacaagcataatcaaa 35925441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 200
Target Start/End: Original strand, 44700331 - 44700366
Alignment:
Q  165 tggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||||||||| ||||||||||||||    
T  44700331 tggagcaaagaaaagtagtaaccaatatcaaagtaa 44700366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 48438130 - 48438173
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaa 299  Q
    ||||||||||||||||||| ||||||||||||||| || |||||    
T  48438130 agacctagatctaagtgtagagcaacaccacaagcataatcaaa 48438173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 2074924 - 2074966
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaacc 202  Q
    ||||||||||||||| |||||||||| |||||||||| |||||    
T  2074924 atgtgtggagcaaaggaaagtagtaaccaatatcaaaataacc 2074966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 7762592 - 7762554
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  7762592 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 7762554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 9635966 - 9636004
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  9635966 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 9636004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 26298904 - 26298950
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  26298904 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 26298950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 27038210 - 27038252
Alignment:
Q  260 ctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||||||||||| ||||||||||||||| || ||||||||    
T  27038210 ctagatctaagtgtagagcaacaccacaagcataatcaaagca 27038252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 29813387 - 29813349
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  29813387 atgtgtggagcaaagaaaagtagtaactaatatcaaagt 29813349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 40592954 - 40592908
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  40592954 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 40592908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 40734823 - 40734785
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  40734823 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 40734785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 40735708 - 40735670
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  40735708 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 40735670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Complemental strand, 47924043 - 47924009
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagc 290  Q
    ||||||||||||||||||| |||||||||||||||    
T  47924043 agacctagatctaagtgtagagcaacaccacaagc 47924009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 16499341 - 16499300
Alignment:
Q  159 aatgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    |||||||||||||||| |||||||||| ||| ||||||||||    
T  16499341 aatgtgtggagcaaaggaaagtagtaaccaacatcaaagtaa 16499300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 29196232 - 29196269
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaag 197  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  29196232 atgtgtggagcaaaggaaagtagtaaccaatatcaaag 29196269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 40519107 - 40519156
Alignment:
Q  155 cttaaatgtgtggagcaaagaa-aagtagtaatcaatatcaaagtaacct 203  Q
    ||||||||||||||||||| |  ||||| |||||||||||||||||||||    
T  40519107 cttaaatgtgtggagcaaaaaggaagtaataatcaatatcaaagtaacct 40519156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 21350853 - 21350893
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||| ||||||| |||||||||| ||||||||||||||    
T  21350853 atgtgtgaagcaaaggaaagtagtaaccaatatcaaagtaa 21350893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 32891416 - 32891376
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||||||| |||||| |||||||    
T  32891416 atgtgtggagcaaaggaaagtagtaaccaatattaaagtaa 32891376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 39153207 - 39153247
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||||||| |||| |||||||||    
T  39153207 atgtgtggagcaaaggaaagtagtaaccaatttcaaagtaa 39153247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 51351982 - 51352022
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| ||||| |||| ||||||||||||||    
T  51351982 atgtgtggagcaaaggaaagtggtaaccaatatcaaagtaa 51352022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 22963605 - 22963662
Alignment:
Q  245 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  22963605 caacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagca 22963662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 23824788 - 23824731
Alignment:
Q  245 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  23824788 caacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagca 23824731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 5017649 - 5017603
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  5017649 agacctagatctaagtgtagagcaacaccacaagcataatcaaagca 5017603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 18232763 - 18232807
Alignment:
Q  258 acctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||    
T  18232763 acctagatctaagtgtagagcaacaccacaagcataatcaaagca 18232807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 4045772 - 4045693
Alignment:
Q  123 tgtgtatttggactcaaaat-cataccaatattcttaaatgtgtggagcaaagaaaagtagtaatcaatatcaaagtaac 201  Q
    |||| ||||||||||||||| || ||||||| ||||| ||||||| ||  ||  |||||||||| |||||||||||||||    
T  4045772 tgtgaatttggactcaaaattcacaccaataatcttatatgtgtgaagttaaagaaagtagtaaccaatatcaaagtaac 4045693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 4629869 - 4629915
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  4629869 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 4629915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 5408912 - 5408950
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  5408912 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 5408950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 5413237 - 5413275
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  5413237 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 5413275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 9182873 - 9182911
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  9182873 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 9182911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 10077346 - 10077300
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  10077346 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 10077300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 28137255 - 28137293
Alignment:
Q  162 gtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  28137255 gtgtggagcaaaggaaagtagtaaccaatatcaaagtaa 28137293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 30519287 - 30519238
Alignment:
Q  140 aatcataccaatattcttaaatgtgtggagcaaagaaaagtagtaatcaat 190  Q
    |||||||||||||   ||||||||||||||||||||||| |||||||||||    
T  30519287 aatcataccaataaatttaaatgtgtggagcaaagaaaa-tagtaatcaat 30519238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 31404517 - 31404555
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  31404517 atgtgtggagcaaaggaaaatagtaatcaatatcaaagt 31404555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 5990753 - 5990699
Alignment:
Q  245 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaa 299  Q
    |||||||||||||||||| ||||||||||| | ||| ||||||||| ||||||||    
T  5990753 caacaacaaatagacctaaatctaagtgtagaacaaaaccacaagcatattcaaa 5990699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 32901992 - 32902073
Alignment:
Q  123 tgtgtatttggactcaaaatcataccaatattcttaaatgtgtggagc-aaagaaaagtagtaatcaatatcaaagtaacct 203  Q
    |||| ||| ||||||||||||| |||||||  |||| ||||||||||| ||||| |||||||||  |||||||||| |||||    
T  32901992 tgtgaattcggactcaaaatcagaccaataaacttagatgtgtggagcaaaagagaagtagtaactaatatcaaagcaacct 32902073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 1292311 - 1292351
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  1292311 atgtggggagcaaagaaaagtagtaaacaatatcaaagtaa 1292351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 12702473 - 12702513
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  12702473 atgtgtggagcaaaggaaagtagtaaccaatatcaaagtaa 12702513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 19491545 - 19491585
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  19491545 atgtgtggagcaaaggaaagtattaatcaatatcaaagtaa 19491585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 41366460 - 41366500
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  41366460 atgtgtggagcaaaggaaagtagtaaccaatatcaaagtaa 41366500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 288
Target Start/End: Complemental strand, 7493253 - 7493210
Alignment:
Q  245 caacaacaaatagacctagatctaagtgtaaagcaacaccacaa 288  Q
    |||||||||||||| ||| ||||||||||| |||||||||||||    
T  7493253 caacaacaaatagatctaaatctaagtgtagagcaacaccacaa 7493210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 8154106 - 8154064
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaacc 202  Q
    ||||||| || |||| |||||||||||||||||||||||||||    
T  8154106 atgtgtgaagtaaaggaaagtagtaatcaatatcaaagtaacc 8154064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 15213112 - 15213074
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  15213112 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 15213074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 26403411 - 26403365
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  26403411 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 26403365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 30143666 - 30143628
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  30143666 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 30143628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 34254173 - 34254211
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  34254173 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 34254211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 1345221 - 1345258
Alignment:
Q  163 tgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  1345221 tgtggagcaaaggaaagtagtaaccaatatcaaagtaa 1345258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 5689593 - 5689556
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaag 197  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  5689593 atgtgtggagcaaaggaaagtagtaaccaatatcaaag 5689556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 11711808 - 11711889
Alignment:
Q  123 tgtgtatttggactcaaaatcataccaatattcttaaatgtgtggagc-aaagaaaagtagtaatcaatatcaaagtaacct 203  Q
    |||| ||| ||||||||||| | |||||||  |||| ||||||||||| |||| |||||||||| ||| || ||||||||||    
T  11711808 tgtgaattcggactcaaaattacaccaataaacttagatgtgtggagcaaaaggaaagtagtaaccaagataaaagtaacct 11711889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 40321398 - 40321361
Alignment:
Q  163 tgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  40321398 tgtggagcaaaggaaagtagcaatcaatatcaaagtaa 40321361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 4734032 - 4733996
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaa 196  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  4734032 atgtgtggagcaaaggaaagtagtaaccaatatcaaa 4733996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 9765999 - 9765955
Alignment:
Q  258 acctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||| ||||||||||| ||||||||||||||| || ||||||||    
T  9765999 acctaaatctaagtgtagagcaacaccacaagcataatcaaagca 9765955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 43036748 - 43036708
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||||||| |||| |||||||||    
T  43036748 atgtgtggagcaaaggaaagtagtaaccaatttcaaagtaa 43036708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 29991379 - 29991341
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  29991379 atgtgtggagcaaagaaaagtagtaaccaatatcaaagt 29991341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 31105242 - 31105282
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    |||||||||| |||| |||||||||||||||||||||||||    
T  31105242 atgtgtggagtaaaggaaagtagtaatcaatatcaaagtaa 31105282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 30843302 - 30843369
Alignment:
Q  136 tcaaaatcataccaatattcttaaatgtgtggagcaaa-gaaaagtagtaatcaatatcaaagtaacc 202  Q
    ||||||||| |||||||  |||| | |||||||||||| | |||||||||| ||||||||||||||||    
T  30843302 tcaaaatcacaccaataaacttagaagtgtggagcaaaaggaaagtagtaaccaatatcaaagtaacc 30843369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 55864 - 55910
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||||||||||||| || ||||||||||||||| || ||||||||    
T  55864 agacctagatctaagtatagagcaacaccacaagcataatcaaagca 55910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 4796848 - 4796802
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  4796848 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 4796802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 8153659 - 8153625
Alignment:
Q  164 gtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||| |||||||||||||||||||||||    
T  8153659 gtggagcaaaggaaagtagtaatcaatatcaaagt 8153625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 18126972 - 18126934
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  18126972 atgtgtggagtaaaggaaagtagtaatcaatatcaaagt 18126934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 20284005 - 20284051
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  20284005 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 20284051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 23344291 - 23344249
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaacc 202  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||    
T  23344291 atgtgtggagcaaaggaaagtagtaaccaatatccaagtaacc 23344249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 23555367 - 23555329
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  23555367 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 23555329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 24525351 - 24525385
Alignment:
Q  163 tgtggagcaaagaaaagtagtaatcaatatcaaag 197  Q
    |||| ||||||||||||||||||||||||||||||    
T  24525351 tgtgtagcaaagaaaagtagtaatcaatatcaaag 24525385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 25766799 - 25766837
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  25766799 atgtgtggagcaaagaaaagtagtaaccaataacaaagt 25766837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 29159719 - 29159765
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  29159719 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 29159765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 35854242 - 35854204
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  35854242 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 35854204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 47675979 - 47676017
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  47675979 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 47676017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 48489757 - 48489719
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  48489757 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 48489719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 49091578 - 49091624
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||||||| |||||||| ||||||||||||||| || ||||||||    
T  49091578 agacctagatttaagtgtagagcaacaccacaagcataatcaaagca 49091624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 495833 - 495870
Alignment:
Q  163 tgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  495833 tgtggagcaaaggaaagtagtaaccaatatcaaagtaa 495870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 2647888 - 2647831
Alignment:
Q  245 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||| ||| ||||||| |||||||| || ||||||||||||||| || ||||||||    
T  2647888 caacaaaaaacagacctaaatctaagtttagagcaacaccacaagcataatcaaagca 2647831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 23564884 - 23564953
Alignment:
Q  133 gactcaaaatcataccaatattcttaaatgtgtggagcaaagaaaagtagtaatcaatatcaaagtaacc 202  Q
    |||||||||||| || ||||  | || ||||||||||  |||||||||||| | ||||||||||||||||    
T  23564884 gactcaaaatcacactaataaacatagatgtgtggagtgaagaaaagtagtgaccaatatcaaagtaacc 23564953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 36146254 - 36146291
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaag 197  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  36146254 atgtgtggagcaaaggaaagtagtaaccaatatcaaag 36146291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 46516502 - 46516445
Alignment:
Q  245 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||| ||| |||| || |||||||||||||||||||||| |||| || ||||||||    
T  46516502 caacaaaaaacagacttaaatctaagtgtaaagcaacaccaaaagcataatcaaagca 46516445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 9190187 - 9190155
Alignment:
Q  258 acctagatctaagtgtaaagcaacaccacaagc 290  Q
    ||||||||||||||||| |||||||||||||||    
T  9190187 acctagatctaagtgtagagcaacaccacaagc 9190155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 19502504 - 19502464
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    ||||||||||||||| |||||||||| |||| |||||||||    
T  19502504 atgtgtggagcaaaggaaagtagtaaccaatttcaaagtaa 19502464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 10634 - 10691
Alignment:
Q  245 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||| ||| ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  10634 caacaaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 10691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 16181 - 16124
Alignment:
Q  245 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    |||||||||||  |||||||||||||||| || ||||||||||| | |||||||||||    
T  16181 caacaacaaatttacctagatctaagtgtgaaacaacaccacaaacatattcaaagca 16124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1668 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 1344 - 1382
Alignment:
Q  160 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 198  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  1344 atgtgtggagcaaaggaaagtagtaatcaatattaaagt 1382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 2408 - 2454
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||||||||||||||| | ||||||||||||| || ||||||||    
T  2408 agacctagatctaagtgtagaacaacaccacaagcataatcaaagca 2454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 5599 - 5645
Alignment:
Q  256 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 302  Q
    ||||||||||||||||||| || |||||||||||| || ||||||||    
T  5599 agacctagatctaagtgtagagaaacaccacaagcataatcaaagca 5645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 148953 - 148994
Alignment:
Q  159 aatgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 200  Q
    |||||||||||||||| |||||||||| ||| ||||||||||    
T  148953 aatgtgtggagcaaaggaaagtagtaaccaacatcaaagtaa 148994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University