View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4266_high_15 (Length: 333)
Name: NF4266_high_15
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 39743467 - 39743148
Alignment:
| Q |
1 |
atgagaaaattaaataccagcactagcagcagagtcaaaatagttacctgcataacatttctgttattggttgaccagtgatgagagaagagacttcacc |
100 |
Q |
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| T |
39743467 |
atgagaaaattaaataccagcactagcagcagagtcaaaatagttacctgcataacatttctgttattggttgaccagtgatgagagaagagacttcacc |
39743368 |
T |
|
| Q |
101 |
atttgcaattctctgtatatatggaaagattccttcgtagctaataactggaacacaacgcttaaactcttttaaatctgttttaaatgtttctctcttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39743367 |
atttgcaattctctgtatatatggaaagattccttcgtaactaataactggaacacaacgcttaaactcttttaaatctgttttaaatgtttctctcttc |
39743268 |
T |
|
| Q |
201 |
atatactgatttaaatactcagtttccttattctgtgttaagatatgtttcaaaaggttatcttgaacctcaccagcattcattgttagcctctctatct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39743267 |
atatactgatttaaatactcagtttccttattctgtgttaagatctgtttcaaaaggttatcttgaacctcaccagcattcattgttagcttctctatct |
39743168 |
T |
|
| Q |
301 |
ccttgagtgcttcttcacct |
320 |
Q |
| |
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|||||||||||||||||||| |
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| T |
39743167 |
ccttgagtgcttcttcacct |
39743148 |
T |
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