View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4266_high_16 (Length: 332)
Name: NF4266_high_16
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 26565134 - 26565440
Alignment:
| Q |
12 |
atgaaatacatcaaagctgaatatgccaagaaatataagaagacattgaatgatgcagttcactctgaaacatctggcaactatagggcttttcttctcg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26565134 |
atgaaatacatcaaagctgaatatgccaagaaatataagaagacattgaatgatgcagttcactctgaaacatctggcaactatagggcttttcttctcg |
26565233 |
T |
|
| Q |
112 |
cacttttgggtccgaataattagtcaaagatgttcaatcatgtttcgttatgggatattttcaaacttcgatgtttagatgttctcaacttggtagtttt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26565234 |
cacttttgggtccgaataattagtcaaagatgttcaatcatgtttcgttatgggatattttcaaacttcgatgtttagatgttctcaacttggtagtttt |
26565333 |
T |
|
| Q |
212 |
atgttctttgtgttgcatttgtaagcattatcatgaacttgcattcaagtttcagttagggacgtgtattgtcagcataatttacatattgaagtgttgt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26565334 |
atgttctttgtgttgcatttgtaagcattatcatgaacttgcattcgagtttcagttagggacgtgtattgtcagcataatttacatattgaagtgttgt |
26565433 |
T |
|
| Q |
312 |
tatttat |
318 |
Q |
| |
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||||||| |
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| T |
26565434 |
tatttat |
26565440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 26559569 - 26559707
Alignment:
| Q |
12 |
atgaaatacatcaaagctgaatatgccaagaaatataagaagacattgaatgatgcagttcactctgaaacatctggcaactatagggcttttcttctcg |
111 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26559569 |
atgaaatacatcaaaactgaatatgcaaagaaatataagaagacattgaatgatgcagttcactctgaaacatccggcaactatagggcttttcttctcg |
26559668 |
T |
|
| Q |
112 |
cacttttgggtccgaataattagtcaaagatgttcaatc |
150 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |
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| T |
26559669 |
cacttttgggtcccaataattagtcaaagatgttcaatc |
26559707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 26553324 - 26553459
Alignment:
| Q |
21 |
atcaaagctgaatatgccaagaaatataagaagacattgaatgatgcagttcactctgaaacatctggcaactatagggcttttcttctcgcacttttgg |
120 |
Q |
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||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| |
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| T |
26553324 |
atcaaagctgaatatgcaaagaaatacaagaagacactgaatgatgcagttcactctgaaacatcaggcaactacagggattttcttctcgcacttttgg |
26553423 |
T |
|
| Q |
121 |
gtccgaataattagtcaaagatgttcaatcatgttt |
156 |
Q |
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|||||||| | ||||||||||||||||||||||||| |
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| T |
26553424 |
gtccgaatcactagtcaaagatgttcaatcatgttt |
26553459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 50933631 - 50933475
Alignment:
| Q |
16 |
aatacatcaaagctgaatatgccaagaaatataagaagacattgaatgatgcagttcactctgaaacatctggcaactatagggcttttcttctcgcact |
115 |
Q |
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|||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| |
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| T |
50933631 |
aatatatcaaagctgaatatgcaaagaaatacaaaaagacattgaatgatgcagttcactctgaaacatctggcaactacaggacttttcttcttgcact |
50933532 |
T |
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| Q |
116 |
tttgggtccgaataattagtcaaagatgttcaatcatgtttcgttatgggatatttt |
172 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||| || |||||||||| |
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| T |
50933531 |
tttgggtcccaatcattagtcaaagatgttcaatcatgtttcatttcgggatatttt |
50933475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 50933447 - 50933403
Alignment:
| Q |
225 |
tgcatttgtaagcattatcatgaacttgcattcaagtttcagtta |
269 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50933447 |
tgcatttgtaagcattatcatgaacttgcattcgagtttcagtta |
50933403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 45506713 - 45506613
Alignment:
| Q |
24 |
aaagctgaatatgccaagaaatataagaagacattgaatgatgcagttcactctgaaacatctggcaactatagggcttttcttctcgcacttttgggtc |
123 |
Q |
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|||||||||||| |||||||| |||||||| ||||||||||||||||||| |||||||||||| |||| ||||||||||||||| ||||||| |||| |
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| T |
45506713 |
aaagctgaatatctaaagaaatacaagaagacgctgaatgatgcagttcactcggaaacatctggccactacagggcttttcttctctcacttttaggtc |
45506614 |
T |
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| Q |
124 |
c |
124 |
Q |
| |
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| |
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| T |
45506613 |
c |
45506613 |
T |
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