View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4266_high_20 (Length: 298)
Name: NF4266_high_20
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 23820478 - 23820208
Alignment:
| Q |
18 |
gtaacatcgccagcacttcttctacgcaaacgattcttgttgctttcatttacacgaggaacctgcaactgctccaaatttgtaacaacctcatccatgt |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23820478 |
gtaacatcaccagcacttcttctacgcaaacgattcttgttgctttcatttacatgaggaacctgcaactgctccaaatttgtaacaacctcatccatgt |
23820379 |
T |
|
| Q |
118 |
ttggtctcaacttggcttctacagaaaggcaccttagggagagtgtagcaaccttataaatatcgtctaattcatattggccctcaagacggctatccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23820378 |
ttggtctcaacttggcttctacagaaaggcaccttagggagagtgtagcaaccttataaatatcttctaattcatattggccctcaagacggctatccaa |
23820279 |
T |
|
| Q |
218 |
cacgcgcaaaatcttacgcttgttggatagatatggcttagcccattccaccaaattttgttgtctctgtg |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
23820278 |
cacgcgcaaaatcttacgcttgttggatagatatggcttagcccattccaccaaattgtgttgtctttgtg |
23820208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 28 - 283
Target Start/End: Complemental strand, 23833471 - 23833216
Alignment:
| Q |
28 |
cagcacttcttctacgcaaacgattcttgttgctttcatttacacgaggaacctgcaactgctccaaatttgtaacaacctcatccatgtttggtctcaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23833471 |
cagcacttcttctacgcaaacgattctggttgcatccatttacatgaggaacctgcaactgctccaaatttgtaacaacctcatccatgtttggtctcaa |
23833372 |
T |
|
| Q |
128 |
cttggcttctacagaaaggcaccttagggagagtgtagcaaccttataaatatcgtctaattcatattggccctcaagacggctatccaacacgcgcaaa |
227 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| ||||||||||| ||| ||| |||||||| |||||||| ||||| || |||||||||||||||||| |
|
|
| T |
23833371 |
cttggcttctactgaaaggcaccgtagggagagtatagcaaccttaaaaacatcttctaattcgtattggccttcaaggcgactatccaacacgcgcaaa |
23833272 |
T |
|
| Q |
228 |
atcttacgcttgttggatagatatggcttagcccattccaccaaattttgttgtct |
283 |
Q |
| |
|
|||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
23833271 |
atcttatgcttgttggatagataaggctttgcccattccaccaaattgtgttgtct |
23833216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 28 - 280
Target Start/End: Complemental strand, 23829635 - 23829383
Alignment:
| Q |
28 |
cagcacttcttctacgcaaacgattcttgttgctttcatttacacgaggaacctgcaactgctccaaatttgtaacaacctcatccatgtttggtctcaa |
127 |
Q |
| |
|
||||||||||||||||| ||||||||| |||| |||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23829635 |
cagcacttcttctacgcgaacgattctgattgcagccatttacatcttgaacctgcaacttctccaaatccgtaacaacctcatccatgtttggtctcaa |
23829536 |
T |
|
| Q |
128 |
cttggcttctacagaaaggcaccttagggagagtgtagcaaccttataaatatcgtctaattcatattggccctcaagacggctatccaacacgcgcaaa |
227 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||| ||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23829535 |
cttggcttctattgaaaggcaccttagggatagtgtagcaactttataggcatcttctaactcatattggccttcaagacggctatccaacacgcgcaaa |
23829436 |
T |
|
| Q |
228 |
atcttacgcttgttggatagatatggcttagcccattccaccaaattttgttg |
280 |
Q |
| |
|
|| ||||||||||||| |||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
23829435 |
attttacgcttgttggttagataaggcttagcccattccaccaaattgtgttg |
23829383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 23825747 - 23825482
Alignment:
| Q |
18 |
gtaacatcgccagcacttcttctacgcaaacgattcttgttgctttcatttacacgaggaacctgcaactgctccaaatttgtaacaacctcatccatgt |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| | ||||| | | ||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23825747 |
gtaacatcatcagcacttcttctacgcaaatgattatggttgcatccgtttacttgaggaatttgcaactgctccaaatttgtaacaacctcatccatgt |
23825648 |
T |
|
| Q |
118 |
ttggtctcaacttggcttctacagaaaggcaccttagggagagtgtagcaaccttataaatatcgtctaattcatattggccctcaagacggctatccaa |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||| ||| ||||||||||||| || |||| |||||||||||| ||||| || |||| || |
|
|
| T |
23825647 |
ttggtctcaacttggcttctattgaaaggcaccgtagggaaagtatagcaaccttataggcgtcttctatttcatattggccttcaaggcgattatcaaa |
23825548 |
T |
|
| Q |
218 |
cacgcgcaaaatcttacgcttgttggatagatatggcttagcccattccaccaaattttgttgtct |
283 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| |
|
|
| T |
23825547 |
cacgtgcaaaatcttacgcttgttggatagacaaggcttagcccattccaccaaattatgttgtct |
23825482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University