View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4266_high_21 (Length: 296)

Name: NF4266_high_21
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4266_high_21
NF4266_high_21
[»] chr5 (1 HSPs)
chr5 (243-296)||(28533134-28533187)
[»] chr4 (2 HSPs)
chr4 (229-276)||(1537252-1537299)
chr4 (229-281)||(1547374-1547426)
[»] chr7 (3 HSPs)
chr7 (229-278)||(15091285-15091334)
chr7 (225-269)||(10167233-10167277)
chr7 (229-261)||(10616213-10616245)
[»] chr6 (1 HSPs)
chr6 (229-275)||(14810035-14810081)


Alignment Details
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 28533187 - 28533134
Alignment:
Q  243 tgttgggaatgtatattcagattcatcatcaacgacggtatggacgaaaacaac 296  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28533187 tgttgggaatgtatcttcagattcatcatcaacgacggtatggacgaaaacaac 28533134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 1537252 - 1537299
Alignment:
Q  229 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacg 276  Q
    |||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  1537252 atttacctgatgagtgttgggaatgtgtattcagattcctcaacaacg 1537299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 1547374 - 1547426
Alignment:
Q  229 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacgacggt 281  Q
    |||||||||| ||||||||||||| ||| |||| ||||||||||| |||||||    
T  1547374 atttacctgacgagtgttgggaatctatcttcaaattcatcatcatcgacggt 1547426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 15091285 - 15091334
Alignment:
Q  229 atttacctgatgagtgttgggaatgtatattcagattcatcatcaacgac 278  Q
    ||||||| |||||||||||||||||  | |||||||||||||||||||||    
T  15091285 atttacccgatgagtgttgggaatgcgtcttcagattcatcatcaacgac 15091334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 10167233 - 10167277
Alignment:
Q  225 tcagatttacctgatgagtgttgggaatgtatattcagattcatc 269  Q
    |||||||||||||| || ||||||||||  |||||||||||||||    
T  10167233 tcagatttacctgacgaatgttgggaattgatattcagattcatc 10167277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 10616245 - 10616213
Alignment:
Q  229 atttacctgatgagtgttgggaatgtatattca 261  Q
    |||||||||||||||||||||||||||| ||||    
T  10616245 atttacctgatgagtgttgggaatgtatcttca 10616213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 14810081 - 14810035
Alignment:
Q  229 atttacctgatgagtgttgggaatgtatattcagattcatcatcaac 275  Q
    ||||||||||||||||||||||| || | || |||||||||||||||    
T  14810081 atttacctgatgagtgttgggaacgtgtctttagattcatcatcaac 14810035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University