View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4266_high_26 (Length: 255)

Name: NF4266_high_26
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4266_high_26
NF4266_high_26
[»] chr2 (6 HSPs)
chr2 (7-255)||(5699855-5700107)
chr2 (74-188)||(12324430-12324544)
chr2 (99-184)||(8485881-8485966)
chr2 (71-188)||(31380499-31380618)
chr2 (7-54)||(19261756-19261803)
chr2 (134-188)||(11183882-11183936)
[»] chr5 (2 HSPs)
chr5 (71-188)||(34272244-34272361)
chr5 (71-188)||(15027014-15027130)
[»] chr6 (5 HSPs)
chr6 (74-190)||(6919321-6919437)
chr6 (70-181)||(29181491-29181602)
chr6 (91-164)||(8171134-8171206)
chr6 (107-188)||(10086065-10086146)
chr6 (120-176)||(30062991-30063047)
[»] chr7 (5 HSPs)
chr7 (71-187)||(32471262-32471378)
chr7 (91-188)||(39773170-39773267)
chr7 (71-188)||(29367426-29367543)
chr7 (7-58)||(29346835-29346886)
chr7 (7-52)||(32471190-32471234)
[»] chr8 (6 HSPs)
chr8 (71-189)||(32848074-32848192)
chr8 (7-188)||(17011638-17011821)
chr8 (7-188)||(17545380-17545563)
chr8 (74-188)||(9617997-9618111)
chr8 (72-186)||(39721287-39721403)
chr8 (148-188)||(11364774-11364814)
[»] chr4 (8 HSPs)
chr4 (70-193)||(45610535-45610659)
chr4 (71-150)||(5842125-5842204)
chr4 (75-161)||(5198896-5198982)
chr4 (120-188)||(23406518-23406586)
chr4 (75-161)||(4848723-4848810)
chr4 (7-52)||(23406633-23406678)
chr4 (13-50)||(49272623-49272660)
chr4 (107-159)||(49272541-49272593)
[»] chr1 (6 HSPs)
chr1 (103-188)||(29274471-29274555)
chr1 (130-185)||(32897267-32897322)
chr1 (125-188)||(12900713-12900776)
chr1 (88-186)||(13399978-13400079)
chr1 (70-152)||(49138095-49138177)
chr1 (120-149)||(4625300-4625329)
[»] chr3 (4 HSPs)
chr3 (71-188)||(46505886-46506003)
chr3 (123-188)||(14594845-14594910)
chr3 (14-54)||(531231-531270)
chr3 (14-54)||(564186-564225)
[»] scaffold0012 (1 HSPs)
scaffold0012 (123-188)||(41910-41975)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 5700107 - 5699855
Alignment:
Q  7 gagtagcaaagggagagaggagagacttcaatcatttttcttcatacctt----tgattctcattggcctatttatgcacaacccaaacttccttgattt 102  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  5700107 gagtaccaaagggagagaggagagacttcaatcatttttcttcataccttctgttgattctcattggcctatttatgcacagcccaaacttccttgattt 5700008  T
Q  103 taggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataacaaaagatggtagaaa 202  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||    
T  5700007 taggatcactagtcacgtgttcatttaccttaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataactgaaaatggtagaaa 5699908  T
Q  203 ttagggtttgttgcttgttgaaattagtttcttgtaatctttttgtatctcgt 255  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  5699907 ttagggtttgttgtttgttgaaattaatttcttgtaatctttttgtatctcgt 5699855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 12324544 - 12324430
Alignment:
Q  74 tttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgcta 173  Q
    |||||||||||| |||  || |||||||||| ||||||  | || || ||||||||||||||| |||||||||| | ||| |||||||||| ||||||||    
T  12324544 tttatgcacaactcaaggttacttgattttaagatcacacgccacgtctccatttacctcaactaattatgttaggtcaaatgtatttcctcatatgcta 12324445  T
Q  174 ttttgaatcataaca 188  Q
    |||||||||||||||    
T  12324444 ttttgaatcataaca 12324430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 8485881 - 8485966
Alignment:
Q  99 attttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcat 184  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| | |||||||| ||||||||    
T  8485881 attttaagaccactagtcatgtgtccatttacctcaatcaattatgttatgccaaatgtatatcctcaaatgctattctgaatcat 8485966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 188
Target Start/End: Complemental strand, 31380618 - 31380499
Alignment:
Q  71 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaacc--aattatgttatgccaagtgtatttcctaata 168  Q
    ||||||||||||||| |||  ||| ||||||||||||| | ||| || |||||||||||  ||||||  ||||||||||||| ||||||||||||  |||    
T  31380618 ctatttatgcacaactcaaggttcattgattttaggatgattagccacgtgtccatttatatcaaccccaattatgttatgctaagtgtatttccacata 31380519  T
Q  169 tgctattttgaatcataaca 188  Q
    ||||| ||||||||||||||    
T  31380518 tgctactttgaatcataaca 31380499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 19261756 - 19261803
Alignment:
Q  7 gagtagcaaagggagagaggagagacttcaatcatttttcttcatacc 54  Q
    ||||| ||||||||||||||| ||||||  ||||||||||||||||||    
T  19261756 gagtatcaaagggagagaggatagactttcatcatttttcttcatacc 19261803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 11183936 - 11183882
Alignment:
Q  134 aaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 188  Q
    |||||||||  || |||||||||||||| || ||||||||||| |||||||||||    
T  11183936 aaccaattacattttgccaagtgtattttctcatatgctatttagaatcataaca 11183882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 188
Target Start/End: Complemental strand, 34272361 - 34272244
Alignment:
Q  71 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatg 170  Q
    |||||||||||||| | || | |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||| || |||||    
T  34272361 ctatttatgcacaatctaagcatccttgattttaggatcactagtcacatgtccatttacctaaaccaattatgttatgccaaatgtattttctcatatg 34272262  T
Q  171 ctattttgaatcataaca 188  Q
    ||||||||||||||||||    
T  34272261 ctattttgaatcataaca 34272244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 15027014 - 15027130
Alignment:
Q  71 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatg 170  Q
    |||| ||||||||||  ||  ||||||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||| ||||||| || || ||    
T  15027014 ctatatatgcacaacttaaggttccttgattttaggatcactagccgagtgtc-atttacctcaaccaattatgttatgccaaatgtattttctcatgtg 15027112  T
Q  171 ctattttgaatcataaca 188  Q
     ||||||| |||||||||    
T  15027113 ttattttggatcataaca 15027130  T

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Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 6919437 - 6919321
Alignment:
Q  74 tttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgcta 173  Q
    ||||||||||| |||||||| ||| ||||||| |||||||| ||  ||||||||| |||||||||||||||||||||||||||||||| |  ||||||||    
T  6919437 tttatgcacaatccaaactttcttaattttagtatcactagccacatgtccatttgcctcaaccaattatgttatgccaagtgtattttcccatatgcta 6919338  T
Q  174 ttttgaatcataacaaa 190  Q
    | |||||||||||||||    
T  6919337 tattgaatcataacaaa 6919321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 181
Target Start/End: Complemental strand, 29181602 - 29181491
Alignment:
Q  70 cctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatat 169  Q
    |||||||||||| | |||||||||| ||||||||||||||||||| ||  ||| ||||| ||||||||| | |||  |||||||||||||||| | ||||    
T  29181602 cctatttatgcatatcccaaacttctttgattttaggatcactagccacttgttcatttgcctcaaccagtaatgacatgccaagtgtatttcttcatat 29181503  T
Q  170 gctattttgaat 181  Q
    ||||||||||||    
T  29181502 gctattttgaat 29181491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 8171206 - 8171134
Alignment:
Q  91 cttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcct 164  Q
    ||||||||||||||| |||||||| ||  |||| |||| | ||||||||||| |||||| ||||||||||||||    
T  8171206 cttccttgattttag-atcactagccacatgtcaatttgcttcaaccaattaagttatgacaagtgtatttcct 8171134  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 10086146 - 10086065
Alignment:
Q  107 atcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 188  Q
    |||||||| ||  |||||||||| ||||||||||||| || | | | |||||||| || || ||||||||||||||||||||    
T  10086146 atcactagccacatgtccatttatctcaaccaattatatttttcaatgtgtattttctcatgtgctattttgaatcataaca 10086065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 30063047 - 30062991
Alignment:
Q  120 tgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattt 176  Q
    |||||||||||||||||||||||  || |||||||||||||| || || ||||||||    
T  30063047 tgtccatttacctcaaccaattacattttgccaagtgtattttctcatgtgctattt 30062991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 32471262 - 32471378
Alignment:
Q  71 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatg 170  Q
    |||||||||||||| |||| |||||||||||||||||||||||   |  ||||||||| ||||||||||| || |||||||||| ||||||||| ||||     
T  32471262 ctatttatgcacaatccaagcttccttgattttaggatcactaactacatgtccatttgcctcaaccaataatattatgccaagcgtatttcctcatatt 32471361  T
Q  171 ctattttgaatcataac 187  Q
    |||||||||||||||||    
T  32471362 ctattttgaatcataac 32471378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 39773267 - 39773170
Alignment:
Q  91 cttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 188  Q
    ||||||| |||||||||||||||| ||  |||||||||  |||||||||||||||||||||| ||||| ||||| |||||  ||||||||||||||||    
T  39773267 cttccttaattttaggatcactagccacatgtccatttttctcaaccaattatgttatgccatgtgtaattccttatatgtcattttgaatcataaca 39773170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 29367426 - 29367543
Alignment:
Q  71 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatg 170  Q
    ||||||||| | |||||||| ||| || |||||||||| ||||| |  ||  |||||||| |||||||||||| |||| | ||||||||||||| ||||     
T  29367426 ctatttatgtataacccaaagttctttaattttaggattactagccgcgtacccatttacttcaaccaattatattatactaagtgtatttcctcatata 29367525  T
Q  171 ctattttgaatcataaca 188  Q
     |||||||||||||||||    
T  29367526 ttattttgaatcataaca 29367543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 29346835 - 29346886
Alignment:
Q  7 gagtagcaaagggagagaggagagacttcaatcatttttcttcatacctttg 58  Q
    ||||| |||||||||| |||||||||||  ||||||||||||||| ||||||    
T  29346835 gagtaccaaagggagaaaggagagactttcatcatttttcttcatgcctttg 29346886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 32471190 - 32471234
Alignment:
Q  7 gagtagcaaagggagagaggagagacttcaatcatttttcttcata 52  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||    
T  32471190 gagtaccaaagggagagaggagagacttc-atcaattttcttcata 32471234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 189
Target Start/End: Original strand, 32848074 - 32848192
Alignment:
Q  71 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatg 170  Q
    |||||||||||||| |||||||||||||||||||||||||  || ||  ||| ||||||||||||||||| |||||||||||| |||| ||  | |||||    
T  32848074 ctatttatgcacaatccaaacttccttgattttaggatcatgagccacatgttcatttacctcaaccaatgatgttatgccaaatgtaattttttatatg 32848173  T
Q  171 ctattttgaatcataacaa 189  Q
    | | |||||||||||||||    
T  32848174 caaatttgaatcataacaa 32848192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 17011638 - 17011821
Alignment:
Q  7 gagtagcaaagggagagaggagagacttcaatcatttttcttcatacct----ttgattctcattggc-ctatttatgcacaacccaaacttccttgatt 101  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||||||     |||||  || ||  | |||||| ||||||||  ||  ||||||||||    
T  17011638 gagtaccaaagggagagaggagagacttgcatcatttttcttcataccaactattgatcatctttttcactattt-tgcacaacttaaggttccttgatt 17011736  T
Q  102 ttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 188  Q
    ||||||||||||| || ||| |   ||||||||||||||||||||||||||||||||| | || || |||||||||| |||||||||    
T  17011737 ttaggatcactagccaagtgaca--ttacctcaaccaattatgttatgccaagtgtatcttctcatttgctattttggatcataaca 17011821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 17545563 - 17545380
Alignment:
Q  7 gagtagcaaagggagagaggagagacttcaatcatttttcttcatacct----ttgattctcattggc-ctatttatgcacaacccaaacttccttgatt 101  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||||||     |||||  || ||  | |||||| ||||||||  ||  ||||||||||    
T  17545563 gagtaccaaagggagagaggagagacttgcatcatttttcttcataccaactattgatcatctttttcactattt-tgcacaacttaaggttccttgatt 17545465  T
Q  102 ttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 188  Q
    ||||||||||||| || ||| |   ||||||||||||||||||||||||||||||||| | || || |||||||||| |||||||||    
T  17545464 ttaggatcactagccaagtgaca--ttacctcaaccaattatgttatgccaagtgtatcttctcatttgctattttggatcataaca 17545380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 9617997 - 9618111
Alignment:
Q  74 tttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgcta 173  Q
    ||||||||||| ||||||||| |||||| |||||||||||| ||  | ||| ||| ||||||||||||||| |||| ||| |||||||| | ||||||||    
T  9617997 tttatgcacaatccaaacttcattgattctaggatcactagccacatctccctttgcctcaaccaattatgatatgtcaaatgtatttcttcatatgcta 9618096  T
Q  174 ttttgaatcataaca 188  Q
    ||||  |||||||||    
T  9618097 ttttagatcataaca 9618111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 39721287 - 39721403
Alignment:
Q  72 tatttatgcacaacccaaacttccttgattttaggatcact--agtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatat 169  Q
    |||||||||||||| |||  || |||||||||| ||||| |  || ||||| |||||||||||| ||||||||| ||||| |||||||||||  | || |    
T  39721287 tatttatgcacaactcaagttttcttgattttaagatcattgtagccatgtatccatttacctcgaccaattatattatgtcaagtgtattttttcatgt 39721386  T
Q  170 gctattttgaatcataa 186  Q
    |||||||||||||||||    
T  39721387 gctattttgaatcataa 39721403  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 11364774 - 11364814
Alignment:
Q  148 tgccaagtgtatttcctaatatgctattttgaatcataaca 188  Q
    |||||||||||||| || ||||||| |||||||||||||||    
T  11364774 tgccaagtgtattttctcatatgctgttttgaatcataaca 11364814  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 45610659 - 45610535
Alignment:
Q  70 cctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatat 169  Q
    ||||||||||||||||| || |||||||||| |||| ||||||||| |  |||| |||| ||||||| |||||| |||||||||||||| || ||  |||    
T  45610659 cctatttatgcacaaccaaaccttccttgatcttagaatcactagttacatgtctatttgcctcaacaaattatattatgccaagtgtaattacttctat 45610560  T
Q  170 g-ctattttgaatcataacaaaaga 193  Q
    | | | |||||||||||||||||||    
T  45610559 gtccaatttgaatcataacaaaaga 45610535  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 5842125 - 5842204
Alignment:
Q  71 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgc 150  Q
    ||||||||| |||| | |||||||||| ||||||| |||| |||||||||| ||||||||||||| ||| ||||| ||||    
T  5842125 ctatttatgtacaatctaaacttccttcattttagtatcaatagtcatgtgcccatttacctcaatcaaatatgtgatgc 5842204  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 5198896 - 5198982
Alignment:
Q  75 ttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtattt 161  Q
    ||||||| || |||| ||||| |||||||   |||||||| ||  ||||||||| |||||||||||||||||||||| |||||||||    
T  5198896 ttatgcataatccaagcttccatgattttttaatcactagccacatgtccatttgcctcaaccaattatgttatgccgagtgtattt 5198982  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 23406586 - 23406518
Alignment:
Q  120 tgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 188  Q
    |||| ||||| ||||||||||||  || | |||||||||||| || || ||||||||||||||||||||    
T  23406586 tgtctatttagctcaaccaattacatttttccaagtgtattttctcatgtgctattttgaatcataaca 23406518  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 4848810 - 4848723
Alignment:
Q  75 ttatgcacaacccaaacttccttgattttagga-tcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtattt 161  Q
    ||||||| || |||| |||||||||||||   | ||||||| ||  ||||||||| | |||||||||||||||||||||| |||||||    
T  4848810 ttatgcataatccaagcttccttgatttttttaatcactagccacatgtccatttgcgtcaaccaattatgttatgccaaatgtattt 4848723  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 23406678 - 23406633
Alignment:
Q  7 gagtagcaaagggagagaggagagacttcaatcatttttcttcata 52  Q
    ||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  23406678 gagtaccaaagagagagaggagagactttcatcatttttcttcata 23406633  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 49272660 - 49272623
Alignment:
Q  13 caaagggagagaggagagacttcaatcatttttcttca 50  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  49272660 caaagggagagaggagagactttcatcatttttcttca 49272623  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 49272593 - 49272541
Alignment:
Q  107 atcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtat 159  Q
    ||||||| |||  |||||||||||||||||||||||  || ||||||||||||    
T  49272593 atcactaatcacatgtccatttacctcaaccaattacattttgccaagtgtat 49272541  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 29274555 - 29274471
Alignment:
Q  103 taggatcactagtcatgtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 188  Q
    |||||||||| | ||  |||||||||  ||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||    
T  29274555 taggatcactggccacatgtccatttgtctcaaccaaatatgttatgccaagtgtatttccttata-gatattttgaatcataaca 29274471  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 32897322 - 32897267
Alignment:
Q  130 cctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcata 185  Q
    |||||||||||| ||||||||||||||||||| || ||||  ||||||||||||||    
T  32897322 cctcaaccaattctgttatgccaagtgtattttctcatatagtattttgaatcata 32897267  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 12900776 - 12900713
Alignment:
Q  125 atttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 188  Q
    ||||| ||||||||||||  || |||||||||||||| || || |||||| |||||||||||||    
T  12900776 atttagctcaaccaattacattttgccaagtgtattttctcatgtgctatcttgaatcataaca 12900713  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 186
Target Start/End: Complemental strand, 13400079 - 13399978
Alignment:
Q  88 aaacttccttgattttaggatcactagtcat---gtgtccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcat 184  Q
    ||||||||||||||||| | | ||||| |||   || || ||||| ||||| |||||||||||| |||| |||| || || | |||||||||||||||||    
T  13400079 aaacttccttgattttatgtttactagccatatagtatcgatttatctcaaacaattatgttataccaaatgtactttcttaaatgctattttgaatcat 13399980  T
Q  185 aa 186  Q
    ||    
T  13399979 aa 13399978  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 49138177 - 49138095
Alignment:
Q  70 cctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacctcaaccaattatgttatgcca 152  Q
    |||||||||| |||| |||| ||||||| |||||||||| | |||  |  |||| |||| |||| ||||||||||||||||||    
T  49138177 cctatttatgtacaatccaagcttcctttattttaggatgaatagctacatgtcaatttgcctcgaccaattatgttatgcca 49138095  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 149
Target Start/End: Complemental strand, 4625329 - 4625300
Alignment:
Q  120 tgtccatttacctcaaccaattatgttatg 149  Q
    ||||||||||||||||||||||||||||||    
T  4625329 tgtccatttacctcaaccaattatgttatg 4625300  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 188
Target Start/End: Complemental strand, 46506003 - 46505886
Alignment:
Q  71 ctatttatgcacaacccaaacttccttgattttaggatcactagtcatgtgtccatttacct-caaccaattatgttatgccaagtgtatttcctaatat 169  Q
    ||||||||||||| || ||  |||||| ||||||||||||| || |||||||||||| |  | |||| ||| || ||||||||||||| |||||| | ||    
T  46506003 ctatttatgcacatcc-aaggttcctttattttaggatcaccagacatgtgtccattcaatttcaactaataatattatgccaagtgtgtttcctcaaat 46505905  T
Q  170 gctattttgaatcataaca 188  Q
    ||||| |||||||||||||    
T  46505904 gctatattgaatcataaca 46505886  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 14594845 - 14594910
Alignment:
Q  123 ccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 188  Q
    |||||||| |||||||||| |||||| |||||| |||||  | |||||||||||||||||||||||    
T  14594845 ccatttacttcaaccaattctgttatcccaagtctattttttcatatgctattttgaatcataaca 14594910  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 531270 - 531231
Alignment:
Q  14 aaagggagagaggagagacttcaatcatttttcttcatacc 54  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  531270 aaagggagagaggagagacttc-atcaattttcttcatacc 531231  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 564225 - 564186
Alignment:
Q  14 aaagggagagaggagagacttcaatcatttttcttcatacc 54  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  564225 aaagggagagaggagagacttc-atcaattttcttcatacc 564186  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 41975 - 41910
Alignment:
Q  123 ccatttacctcaaccaattatgttatgccaagtgtatttcctaatatgctattttgaatcataaca 188  Q
    |||||||| |||||||||| |||||| |||||| |||||  | |||||||||||||||||||||||    
T  41975 ccatttacttcaaccaattctgttatcccaagtctattttttcatatgctattttgaatcataaca 41910  T

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