View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4266_high_27 (Length: 251)
Name: NF4266_high_27
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 4484108 - 4483895
Alignment:
| Q |
1 |
aaaaattctccttttaaggagaataagcgaggtgttccgaggtttaaaccccaactaatacatatattatgtaatgttcctataaattgaactaaactta |
100 |
Q |
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| T |
4484108 |
aaaaattctccttttaaggagaataagcgaggtgttccgaggtttaaaccacaactaatacatatattatgtaatgttcctataaactgaactaaactta |
4484009 |
T |
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| Q |
101 |
cgatgatttgttgttgttgtttaaactaataatttttgtttgtatataaaactcttataatacaattcttatacaacaatagtgttaaggtttttgaaac |
200 |
Q |
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| T |
4484008 |
cgatgatttgttgttgttgtttaaactaataatttttgtttgtatataaaactcttataatacaattcttatacaacaatagtgttaaggtttttgaaac |
4483909 |
T |
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| Q |
201 |
aaaaattagagtta |
214 |
Q |
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||||| | |||||| |
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| T |
4483908 |
aaaaaatggagtta |
4483895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 47070888 - 47070843
Alignment:
| Q |
61 |
catatattatgtaatgttcctataaattgaactaaacttacgatga |
106 |
Q |
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||||||||||||| ||||||||| || ||||||||||| ||||||| |
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| T |
47070888 |
catatattatgtattgttcctatcaactgaactaaactcacgatga |
47070843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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