View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4266_high_30 (Length: 242)

Name: NF4266_high_30
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4266_high_30
NF4266_high_30
[»] chr6 (5 HSPs)
chr6 (1-75)||(32592783-32592857)
chr6 (125-185)||(32592907-32592967)
chr6 (7-55)||(32602915-32602963)
chr6 (146-185)||(32603046-32603085)
chr6 (193-233)||(32592998-32593038)


Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 32592783 - 32592857
Alignment:
Q  1 attagtttcttccgtcagtttgtccactagatgaatggattgaatataatagctgcctttatcattatgatgcta 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32592783 attagtttcttccgtcagtttgtccactagatgaatggattgaatataatagctgcctttatcattatgatgcta 32592857  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 32592907 - 32592967
Alignment:
Q  125 ggcaaaacaatagaatcttcagtaacgtatatatactttttatgtcatgtaaagagtgaca 185  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32592907 ggcaaaacaatagaatcttcattaacgtatatatactttttatgtcatgtaaagagtgaca 32592967  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 32602915 - 32602963
Alignment:
Q  7 ttcttccgtcagtttgtccactagatgaatggattgaatataatagctg 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32602915 ttcttccgtcagtttgtccactagatgaatgaattgaatataatagctg 32602963  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 32603046 - 32603085
Alignment:
Q  146 gtaacgtatatatactttttatgtcatgtaaagagtgaca 185  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  32603046 gtaacatatatatactttttatgtgatgtaaagagtgaca 32603085  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 32592998 - 32593038
Alignment:
Q  193 acttattagcaagccatttgggttggtttgatgatgatgat 233  Q
    |||||||  ||||||||||||||| ||||||||||||||||    
T  32592998 acttattcccaagccatttgggtttgtttgatgatgatgat 32593038  T

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