View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4266_high_9 (Length: 401)

Name: NF4266_high_9
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4266_high_9
NF4266_high_9
[»] chr4 (8 HSPs)
chr4 (10-207)||(48174878-48175075)
chr4 (205-388)||(48173909-48174092)
chr4 (304-364)||(11028815-11028875)
chr4 (266-363)||(7833755-7833853)
chr4 (297-366)||(45015667-45015737)
chr4 (304-386)||(19987705-19987788)
chr4 (297-363)||(8107135-8107201)
chr4 (325-366)||(18936206-18936247)
[»] chr1 (7 HSPs)
chr1 (304-386)||(32025010-32025093)
chr1 (304-386)||(32025306-32025389)
chr1 (304-365)||(32025602-32025664)
chr1 (286-361)||(34228434-34228510)
chr1 (325-386)||(50014009-50014069)
chr1 (304-363)||(31412393-31412453)
chr1 (342-382)||(44462004-44462044)
[»] chr6 (3 HSPs)
chr6 (246-363)||(4140077-4140195)
chr6 (304-363)||(30045506-30045566)
chr6 (319-386)||(35033136-35033204)
[»] chr7 (9 HSPs)
chr7 (302-386)||(37223605-37223688)
chr7 (251-365)||(37223841-37223956)
chr7 (323-364)||(8356210-8356251)
chr7 (303-364)||(2414305-2414367)
chr7 (302-363)||(13789497-13789559)
chr7 (297-366)||(25194475-25194545)
chr7 (325-386)||(3958324-3958385)
chr7 (297-385)||(7741704-7741793)
chr7 (325-386)||(23072132-23072193)
[»] chr2 (11 HSPs)
chr2 (304-386)||(26533338-26533421)
chr2 (324-386)||(44279086-44279148)
chr2 (304-364)||(8596463-8596524)
chr2 (338-382)||(4919139-4919183)
chr2 (304-363)||(26533635-26533695)
chr2 (308-366)||(14913562-14913621)
chr2 (325-363)||(31074296-31074334)
chr2 (345-386)||(27187184-27187225)
chr2 (345-386)||(27836726-27836767)
chr2 (345-386)||(27836998-27837039)
chr2 (325-385)||(3736308-3736368)
[»] scaffold0007 (1 HSPs)
scaffold0007 (304-365)||(262180-262242)
[»] chr3 (2 HSPs)
chr3 (304-363)||(7407884-7407944)
chr3 (325-363)||(3870769-3870807)
[»] chr5 (5 HSPs)
chr5 (304-364)||(10567399-10567460)
chr5 (286-386)||(15226099-15226200)
chr5 (325-386)||(36976008-36976069)
chr5 (297-363)||(15173456-15173523)
chr5 (281-365)||(22586964-22587049)
[»] scaffold0251 (1 HSPs)
scaffold0251 (325-366)||(12682-12723)
[»] chr8 (2 HSPs)
chr8 (286-366)||(21008417-21008498)
chr8 (325-386)||(34373871-34373931)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 48175075 - 48174878
Alignment:
Q  10 gcataggaggtgaaactttagactcgtctgcaaaatcattgtttagtataataagttccatttaaatgcagagagaatgaccaatgtcaaattgattgtg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  48175075 gcataggaggtgaaactttagactcgtctgcaaaatcattgtttagtataataagttccatttaaatgcagagagaatcaccaatgtcaaattgattttg 48174976  T
Q  110 tctctctattgaatgtgattttagtaactagacatgttttactattgagataacttaggtttgactcgaagtgaaaaaagttgattttgattaaatgt 207  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48174975 tctctctattgaatgtgattttagaaactagacatgttttactattaagataacttaggtttgactcgaagtgaaaaaagttgattttgattaaatgt 48174878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 205 - 388
Target Start/End: Complemental strand, 48174092 - 48173909
Alignment:
Q  205 tgttgaaaaacttgtactaacttttacaacaaaggttagaattagaagtctcacgttgagaagataaaagtgatcaatgtagtactaaagttatgatgct 304  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48174092 tgttgaaaaacttgtactaacttttacaacaaaggttagagttagaagtctcacgttgagaagataaaagtgatcaatgtagtactaaagttatgatgct 48173993  T
Q  305 ctcccacctaatgaactattttttgggttggactctcctcataggcttaagtcctaacaattattgatttcattgagagttgtg 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  48173992 ctcccacctaatgaactattttttgggttggactctcctcataggcttaagtcctaacaattactgatttcattgatagttgtg 48173909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 11028815 - 11028875
Alignment:
Q  304 tctcccacctaatgaactattttttgggttggactctcctcataggcttaagtcctaacaa 364  Q
    |||| ||||||||| ||||||||||||||||| |||| ||||| |||||||||||||||||    
T  11028815 tctctcacctaatggactattttttgggttggtctcttctcatgggcttaagtcctaacaa 11028875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 363
Target Start/End: Complemental strand, 7833853 - 7833755
Alignment:
Q  266 agataaaagtgatcaatgtagtactaaagttatgatgctctcccacctaatgaacta-ttttttgggttggactctcctcataggcttaagtcctaaca 363  Q
    ||||||||||| |  |||| ||||| |||| |||| |||||||||||||||| |||| | |||||||||||  |  |||||| ||||||||||||||||    
T  7833853 agataaaagtgcttgatgtggtacttaagtcatgaggctctcccacctaatggactagtcttttgggttgggtttccctcatgggcttaagtcctaaca 7833755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 366
Target Start/End: Complemental strand, 45015737 - 45015667
Alignment:
Q  297 atgatgctctcccacctaatgaacta-ttttttgggttggactctcctcataggcttaagtcctaacaatt 366  Q
    |||| ||||||| | |||||| |||| |||||||||| |||||||| |||| |||||||||||||||||||    
T  45015737 atgaggctctcctatctaatggactagttttttgggtcggactctcttcatgggcttaagtcctaacaatt 45015667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 386
Target Start/End: Original strand, 19987705 - 19987788
Alignment:
Q  304 tctcccacctaatgaactattttt-tgggttggactctcctcataggcttaagtcctaacaattattgatttcattgagagttg 386  Q
    ||||||||||| || |||| | || |||||| | |||||||||| | |||||||||||||||||  || |||||||||||||||    
T  19987705 tctcccacctattggactagtcttctgggttaggctctcctcatggacttaagtcctaacaattggtgctttcattgagagttg 19987788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 8107201 - 8107135
Alignment:
Q  297 atgatgctctcccacctaatgaactattttttgggttggactctcctcataggcttaagtcctaaca 363  Q
    |||||| ||||||||| | || |||| | |||  |||||||||||||||| ||||||||||||||||    
T  8107201 atgatgttctcccacccattggactaatcttttcgttggactctcctcatgggcttaagtcctaaca 8107135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 366
Target Start/End: Original strand, 18936206 - 18936247
Alignment:
Q  325 ttttgggttggactctcctcataggcttaagtcctaacaatt 366  Q
    ||||||||||| |||||||||| |||||||||||||| ||||    
T  18936206 ttttgggttgggctctcctcatgggcttaagtcctaagaatt 18936247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 386
Target Start/End: Original strand, 32025010 - 32025093
Alignment:
Q  304 tctcccacctaatgaacta-ttttttgggttggactctcctcataggcttaagtcctaacaattattgatttcattgagagttg 386  Q
    ||||||||||| || |||| ||||||||||||| |||||||||| |||||||||||||||||||  || |||||||||||||||    
T  32025010 tctcccacctattggactagttttttgggttgggctctcctcatgggcttaagtcctaacaattggtgctttcattgagagttg 32025093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 386
Target Start/End: Original strand, 32025306 - 32025389
Alignment:
Q  304 tctcccacctaatgaacta-ttttttgggttggactctcctcataggcttaagtcctaacaattattgatttcattgagagttg 386  Q
    ||||||||||| || |||| ||||||||||||| |||||||||| |||||||||||||||||||  || |||||||||||||||    
T  32025306 tctcccacctattggactagttttttgggttgggctctcctcatgggcttaagtcctaacaattggtgctttcattgagagttg 32025389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 32025602 - 32025664
Alignment:
Q  304 tctcccacctaatgaacta-ttttttgggttggactctcctcataggcttaagtcctaacaat 365  Q
    ||||||||||| || |||| ||||||||||||| |||||||||| ||||||||||||||||||    
T  32025602 tctcccacctattggactagttttttgggttgggctctcctcatgggcttaagtcctaacaat 32025664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 34228510 - 34228434
Alignment:
Q  286 gtactaaagttatgatgctctcccacctaatgaactatt-ttttgggttggactctcctcataggcttaagtcctaa 361  Q
    ||||| ||| ||||| |||||||||| ||||| |||| | |||||||||||||||||||||| | ||||||||||||    
T  34228510 gtacttaagctatgaggctctcccacttaatggactagtcttttgggttggactctcctcatggacttaagtcctaa 34228434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 50014069 - 50014009
Alignment:
Q  325 ttttgggttggactctcctcataggcttaagtcctaacaattattgatttcattgagagttg 386  Q
    ||||||||||| ||||||| || |||||||||||| ||||||  || |||||||||||||||    
T  50014069 ttttgggttgg-ctctcctaatgggcttaagtccttacaattggtgctttcattgagagttg 50014009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 31412453 - 31412393
Alignment:
Q  304 tctcccacctaatgaactatt-ttttgggttggactctcctcataggcttaagtcctaaca 363  Q
    ||||||||||| | ||||| | |||||||||||||||||||||| | |||| |||||||||    
T  31412453 tctcccacctattcaactagtcttttgggttggactctcctcatggacttaggtcctaaca 31412393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 44462004 - 44462044
Alignment:
Q  342 ctcataggcttaagtcctaacaattattgatttcattgaga 382  Q
    ||||| |||||||||||||||||||| || |||||||||||    
T  44462004 ctcatgggcttaagtcctaacaattagtgttttcattgaga 44462044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 363
Target Start/End: Original strand, 4140077 - 4140195
Alignment:
Q  246 ttagaagtctcacgttgagaagataaaagtgatcaatgtagtactaaagttatgatgctctcccacctaatgaacta-ttttttgggttggactctcctc 344  Q
    ||||||||||||| ||||  ||||||||||| ||||| | ||||| |||  ||||  ||||||||| |||||||||| | ||||||||||||||||| ||    
T  4140077 ttagaagtctcacattgaatagataaaagtgctcaatatggtacttaagccatgagactctcccacgtaatgaactagtcttttgggttggactctcttc 4140176  T
Q  345 ataggcttaagtcctaaca 363  Q
    || ||||||| ||||||||    
T  4140177 atgggcttaaatcctaaca 4140195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 30045506 - 30045566
Alignment:
Q  304 tctcccacctaatgaacta-ttttttgggttggactctcctcataggcttaagtcctaaca 363  Q
    ||||||||||| || |||| ||||||||||||| |||||||||| ||||||||||||||||    
T  30045506 tctcccacctattggactagttttttgggttgggctctcctcatgggcttaagtcctaaca 30045566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 35033136 - 35033204
Alignment:
Q  319 actattttttgggttggactctcctcataggc-ttaagtcctaacaattattgatttcattgagagttg 386  Q
    |||| |||||||||||||||||| |||| | | ||||||||||||||||  || |||| ||||||||||    
T  35033136 actagtttttgggttggactctcatcattgactttaagtcctaacaattggtgctttcgttgagagttg 35033204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 37223605 - 37223688
Alignment:
Q  302 gctctcccacctaatgaactattttttgggttggactctcctcataggcttaagtcctaacaattattgatttcattgagagttg 386  Q
    |||||||||||||||| |||| ||||||| |||| ||||||||||  ||||||||||||||||||  || |||||||||||||||    
T  37223605 gctctcccacctaatggactagtttttgg-ttgggctctcctcatgtgcttaagtcctaacaattggtgctttcattgagagttg 37223688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 365
Target Start/End: Original strand, 37223841 - 37223956
Alignment:
Q  251 agtctcacgttgagaagataaaagtgatcaatgtagtactaaagttatgatgctctcccacctaatgaactattttttgg-gttggactctcctcatagg 349  Q
    |||| ||| ||||| ||||||||||| ||||||  ||||| |||  ||||  ||||||||||||||| |||| | || || ||||| ||||||| || ||    
T  37223841 agtcccacattgagtagataaaagtgctcaatgaggtacttaagccatgagactctcccacctaatggactagtcttaggcgttgggctctccttatggg 37223940  T
Q  350 cttaagtcctaacaat 365  Q
    ||||||||||||||||    
T  37223941 cttaagtcctaacaat 37223956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 8356251 - 8356210
Alignment:
Q  323 ttttttgggttggactctcctcataggcttaagtcctaacaa 364  Q
    ||||||||||||| |||||||||| |||||||||||||||||    
T  8356251 ttttttgggttgggctctcctcatgggcttaagtcctaacaa 8356210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 2414367 - 2414305
Alignment:
Q  303 ctctcccacctaatgaacta-ttttttgggttggactctcctcataggcttaagtcctaacaa 364  Q
    |||||||||||||||||||| | ||| |||||| |||||||||||  | ||||||||||||||    
T  2414367 ctctcccacctaatgaactagtatttggggttgaactctcctcatgagtttaagtcctaacaa 2414305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 13789559 - 13789497
Alignment:
Q  302 gctctcccacctaatgaacta-ttttttgggttggactctcctcataggcttaagtcctaaca 363  Q
    ||||||||||||| || |||| |||||| |||||| |||||||| | ||||||||||||||||    
T  13789559 gctctcccacctattggactagttttttaggttgggctctcctcttgggcttaagtcctaaca 13789497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 366
Target Start/End: Original strand, 25194475 - 25194545
Alignment:
Q  297 atgatgctctcccacctaatgaactatt-ttttgggttggactctcctcataggcttaagtcctaacaatt 366  Q
    |||| |||||||| |||||||||||| | ||||||||| ||||| |||||| || |||| |||||||||||    
T  25194475 atgaggctctcccccctaatgaactagtgttttgggttagactcacctcatgggtttaaatcctaacaatt 25194545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 3958385 - 3958324
Alignment:
Q  325 ttttgggttggactctcctcataggcttaagtcctaacaattattgatttcattgagagttg 386  Q
    |||||| |||| |||||||||| | |||||||||||||||||  || |||| ||||||||||    
T  3958385 ttttggattgggctctcctcattgacttaagtcctaacaattggtgctttcgttgagagttg 3958324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 385
Target Start/End: Complemental strand, 7741793 - 7741704
Alignment:
Q  297 atgatgctctcccacctaatgaactatt-ttttgggttggactctcctcataggcttaagtcctaacaattattgatttcattgagagtt 385  Q
    |||||||||||| | |||||| | || | |||||||||| ||| || |||| ||||||| |||||||||||  || ||||||||||||||    
T  7741793 atgatgctctcctagctaatggattagtcttttgggttgaactttcttcatgggcttaaatcctaacaattgatgctttcattgagagtt 7741704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 23072132 - 23072193
Alignment:
Q  325 ttttgggttggactctcctcataggcttaagtcctaacaattattgatttcattgagagttg 386  Q
    ||||||||| | ||||| |||| |||||||||| ||| ||||| || |||||||||||||||    
T  23072132 ttttgggttaggctctcttcatgggcttaagtcgtaagaattagtgctttcattgagagttg 23072193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 304 - 386
Target Start/End: Original strand, 26533338 - 26533421
Alignment:
Q  304 tctcccacctaatgaactatt-ttttgggttggactctcctcataggcttaagtcctaacaattattgatttcattgagagttg 386  Q
    |||||||||||||| |||| | ||||||||||| |||||||||| |||||||||||||||| ||  || |||||||||||||||    
T  26533338 tctcccacctaatggactagtcttttgggttgggctctcctcatgggcttaagtcctaacagttggtgctttcattgagagttg 26533421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 386
Target Start/End: Original strand, 44279086 - 44279148
Alignment:
Q  324 tttttgggttggactctcctcataggcttaagtcctaacaattattgatttcattgagagttg 386  Q
    |||||||||||| |||||||||  || ||||||||||||||||  || |||||||||||||||    
T  44279086 tttttgggttgggctctcctcacgggtttaagtcctaacaattggtgctttcattgagagttg 44279148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 8596524 - 8596463
Alignment:
Q  304 tctcccacctaatgaacta-ttttttgggttggactctcctcataggcttaagtcctaacaa 364  Q
    ||||||||||| || |||| ||||||||||||| |||||||| | |||||||||||||||||    
T  8596524 tctcccacctattggactagttttttgggttgggctctcctcgtgggcttaagtcctaacaa 8596463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 4919183 - 4919139
Alignment:
Q  338 tctcctcataggcttaagtcctaacaattattgatttcattgaga 382  Q
    |||||| ||||| |||||||||||||||||||| |||||||||||    
T  4919183 tctcctaataggattaagtcctaacaattattgttttcattgaga 4919139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 26533635 - 26533695
Alignment:
Q  304 tctcccacctaatgaactatt-ttttgggttggactctcctcataggcttaagtcctaaca 363  Q
    ||||||||||| || |||| | ||||||||||| |||||||||| ||||||||||||||||    
T  26533635 tctcccacctattggactagtcttttgggttgggctctcctcatgggcttaagtcctaaca 26533695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 14913621 - 14913562
Alignment:
Q  308 ccacctaatgaactatt-ttttgggttggactctcctcataggcttaagtcctaacaatt 366  Q
    |||||||||| |||| | |||| |||||| ||| ||||||||||||||||||||||||||    
T  14913621 ccacctaatggactagtcttttcggttgggctcccctcataggcttaagtcctaacaatt 14913562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 363
Target Start/End: Original strand, 31074296 - 31074334
Alignment:
Q  325 ttttgggttggactctcctcataggcttaagtcctaaca 363  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  31074296 ttttgggttgggctctcctcatgggcttaagtcctaaca 31074334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 27187225 - 27187184
Alignment:
Q  345 ataggcttaagtcctaacaattattgatttcattgagagttg 386  Q
    ||||||||||||||||||||||  || |||||||||||||||    
T  27187225 ataggcttaagtcctaacaattggtgctttcattgagagttg 27187184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 27836767 - 27836726
Alignment:
Q  345 ataggcttaagtcctaacaattattgatttcattgagagttg 386  Q
    ||||||||||||||||||||||  || |||||||||||||||    
T  27836767 ataggcttaagtcctaacaattggtgctttcattgagagttg 27836726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 27837039 - 27836998
Alignment:
Q  345 ataggcttaagtcctaacaattattgatttcattgagagttg 386  Q
    ||||||||||||||||||||||  || |||||||||||||||    
T  27837039 ataggcttaagtcctaacaattggtgctttcattgagagttg 27836998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 3736368 - 3736308
Alignment:
Q  325 ttttgggttggactctcctcataggcttaagtcctaacaattattgatttcattgagagtt 385  Q
    |||||||||  ||||| |||||||| ||||||| ||||||||  || ||||||||||||||    
T  3736368 ttttgggttaaactcttctcataggtttaagtcttaacaattgatgttttcattgagagtt 3736308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 262180 - 262242
Alignment:
Q  304 tctcccacctaatgaacta-ttttttgggttggactctcctcataggcttaagtcctaacaat 365  Q
    ||||||||||| || |||| ||||||||||||| |||||||||| ||||||||||||||||||    
T  262180 tctcccacctattggactagttttttgggttgggctctcctcatgggcttaagtcctaacaat 262242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 7407884 - 7407944
Alignment:
Q  304 tctcccacctaatgaacta-ttttttgggttggactctcctcataggcttaagtcctaaca 363  Q
    ||||||||||| || |||| ||||||||||||| |||||||||| ||||||||||||||||    
T  7407884 tctcccacctattggactagttttttgggttgggctctcctcatgggcttaagtcctaaca 7407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 363
Target Start/End: Complemental strand, 3870807 - 3870769
Alignment:
Q  325 ttttgggttggactctcctcataggcttaagtcctaaca 363  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  3870807 ttttgggttgggctctcctcatgggcttaagtcctaaca 3870769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 10567399 - 10567460
Alignment:
Q  304 tctcccacctaatgaactatt-ttttgggttggactctcctcataggcttaagtcctaacaa 364  Q
    ||||||||||| || |||| | ||||||||||| |||||||||| |||||||||||||||||    
T  10567399 tctcccacctattgcactagtcttttgggttgggctctcctcatgggcttaagtcctaacaa 10567460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 386
Target Start/End: Complemental strand, 15226200 - 15226099
Alignment:
Q  286 gtactaaagttatgatgctctcccacctaatgaactatt-ttttgggttggactctcctcataggcttaagtcctaacaattattgatttcattgagagt 384  Q
    ||||| ||| ||||| ||||| |||  ||||| |||||| |||||| |||  |||||||||| |||||||||||||||||||  || ||| |||||||||    
T  15226200 gtacttaagctatgaggctctgccaattaatggactattcttttggattgagctctcctcatgggcttaagtcctaacaattgatgttttaattgagagt 15226101  T
Q  385 tg 386  Q
    ||    
T  15226100 tg 15226099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 36976008 - 36976069
Alignment:
Q  325 ttttgggttggactctcctcataggcttaagtcctaacaattattgatttcattgagagttg 386  Q
    ||||||||| | |||||||||| ||||||| ||||||||||| ||| ||||||||| |||||    
T  36976008 ttttgggttaggctctcctcatgggcttaaatcctaacaatttttgctttcattgaaagttg 36976069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 15173523 - 15173456
Alignment:
Q  297 atgatgctctcccacctaatgaactatt-ttttgggttggactctcctcataggcttaagtcctaaca 363  Q
    |||| ||||||||||||  || |||| | ||||||||||| |||||||||| ||||||||||||||||    
T  15173523 atgaggctctcccaccttttggactagtcttttgggttgggctctcctcatgggcttaagtcctaaca 15173456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 365
Target Start/End: Complemental strand, 22587049 - 22586964
Alignment:
Q  281 atgtagtactaaagttatgatgctctcccacctaatgaactatt-ttttgggttggactctcctcataggcttaagtcctaacaat 365  Q
    |||||||||| |||  |||| |||||| |||||| || |||| | ||||||||| | |||| ||||| ||||||||||||||||||    
T  22587049 atgtagtacttaagccatgaggctctcacacctattggactagtcttttgggtttggctcttctcatgggcttaagtcctaacaat 22586964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 366
Target Start/End: Original strand, 12682 - 12723
Alignment:
Q  325 ttttgggttggactctcctcataggcttaagtcctaacaatt 366  Q
    ||||||||||| |||||||||| |||||| ||||||||||||    
T  12682 ttttgggttgggctctcctcatgggcttaggtcctaacaatt 12723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 366
Target Start/End: Complemental strand, 21008498 - 21008417
Alignment:
Q  286 gtactaaagttatgatgctctcccacctaatgaactatt-ttttgggttggactctcctcataggcttaagtcctaacaatt 366  Q
    ||||| |||||| || |||| ||||||||||| |||  | ||||||||||| |||||||||| || ||||||||||| ||||    
T  21008498 gtacttaagttacgaggctcccccacctaatggacttgtcttttgggttgggctctcctcatgggtttaagtcctaataatt 21008417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 34373931 - 34373871
Alignment:
Q  325 ttttgggttggactctcctcataggcttaagtcctaacaattattgatttcattgagagttg 386  Q
    ||||| ||||| |||| ||||| |||||||||||||||||||  || |||||||||||||||    
T  34373931 ttttgcgttgggctcttctcat-ggcttaagtcctaacaattgatgctttcattgagagttg 34373871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University