View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4266_low_14 (Length: 360)
Name: NF4266_low_14
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 48395550 - 48395224
Alignment:
| Q |
16 |
acctgtggtggaggatctccttcttgaagtactgaaacatctacctcaaatggccaaatgtatgtttctgtgttatcttctctggacaagctccagtcat |
115 |
Q |
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| T |
48395550 |
acctgtggtggaggatctccttcttgaagtactgaaacatcaacctcaaatggccaaatgtatgtttctgtgttatcttctctggacaagctccagtcat |
48395451 |
T |
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| Q |
116 |
acattcttctttcatccggcgatgacatgatagtgtatgattcctatatacaattaaggttaaccaaatcagcacctctcaagtctcacctataataata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48395450 |
acattcttctttcatccggcgatgacatgatagtgtatgattcctatatacagttaaggttaaccaaatcatcacctctcaagtctcacctataataata |
48395351 |
T |
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| Q |
216 |
atgcaaacacaaaaatttaaatcatgcatatatactaactctgagaagttccaatttcttgttgagtatgtcttcctctaaaccttgactctccaattct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48395350 |
atgcaaacacaaaaatttaaatcatgcatatatactaactctgagaagttccaatttcttgttgagtatgtcttcctctaaaccttgactctccaattct |
48395251 |
T |
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| Q |
316 |
cgaaccttgttattatacgcaactggt |
342 |
Q |
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||||||||||||||||||||||||||| |
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| T |
48395250 |
cgaaccttgttattatacgcaactggt |
48395224 |
T |
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