View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4266_low_16 (Length: 347)
Name: NF4266_low_16
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 40944335 - 40944013
Alignment:
| Q |
19 |
ccatgagctttggaattaggtcttccagttagtaaaccagcaatgtaagatagagggaccaaatctcctgaagctgtgattgtaccgcgaagtggtaaac |
118 |
Q |
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| T |
40944335 |
ccatgagctttggaatttggtcttccagttagtaaaccagcaatgtaagatagagggaccaaatctcctgaagctgtgattgtaccgcgaagtggtaaac |
40944236 |
T |
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| Q |
119 |
atggagtgacgttgttgttaaggagattggtgatggcttccaagatttcaaatctgattcctgaataaccttggaggagtgtgttgattctcactagcat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40944235 |
atggagtgacgttgttgttaaggagattggtgatggcttccaagatttcaaatctgattcctgaataaccttggaggagtgtgttgattctcactagcat |
40944136 |
T |
|
| Q |
219 |
ggcagctcttgttgctgtgtgtggaagtgtgtggcttgactcagttccgtttccaaatattccagcattcaaaaatctgtaaaacaagcagaataagcat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40944135 |
ggcagctcttgttgctgtgtgtggaagtgtgtggcttgactcacttccttttccaaatattccagcattcaaaaatctgaaaaacaagcagaataagcat |
40944036 |
T |
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| Q |
319 |
cagaaccatatattttcttctgt |
341 |
Q |
| |
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||||||||| ||||||||||||| |
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| T |
40944035 |
cagaaccatttattttcttctgt |
40944013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 40958300 - 40958013
Alignment:
| Q |
19 |
ccatgagctttggaattaggtcttccagttagtaaaccagcaatgtaagatagagggaccaaatctcctgaagctgtgattgtaccgcgaagtggtaaac |
118 |
Q |
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||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40958300 |
ccatgagcttttgaatttggtcttcctgttagtaaaccagcaatgtaagatagagggaccaaatctcctgaagctgtgattgtaccgcgaagtggtaaac |
40958201 |
T |
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| Q |
119 |
atggagtgacgttgttgttaaggagattggtgatggcttccaagatttcaaatctgattcctgaataaccttggaggagtgtgttgattctcactagcat |
218 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40958200 |
atggagtgacgttgttgttaaggagcttagtgatggcttccaagatttcaaatctaattcctgaatagccttggaggagtgtgttgattctcactagcat |
40958101 |
T |
|
| Q |
219 |
ggcagctcttgttgctgtgtgtggaagtgtgtggcttgactcagttccgtttccaaatattccagcattcaaaaatctgtaaaacaag |
306 |
Q |
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||| ||||||||||| |||||||| |||||||| ||||||| ||||| ||||| |||||||| ||||||||||| ||| |||||||| |
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| T |
40958100 |
ggctgctcttgttgccgtgtgtggtagtgtgtgatttgactctgttccatttccgaatattcctgcattcaaaaacctggaaaacaag |
40958013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 37 - 293
Target Start/End: Original strand, 28185102 - 28185358
Alignment:
| Q |
37 |
ggtcttccagttagtaaaccagcaatgtaagatagagggaccaaatctcctgaagctgtgattgtaccgcgaagtggtaaacatggagtgacgttgttgt |
136 |
Q |
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||||| || |||| |||||| ||||||||||| || || || | ||| || ||||||||||||||||||||||||||||||||||| || | ||||||| |
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| T |
28185102 |
ggtctgcccgttaataaaccggcaatgtaagagagtggaacaagatcaccggaagctgtgattgtaccgcgaagtggtaaacatggggtaatattgttgt |
28185201 |
T |
|
| Q |
137 |
taaggagattggtgatggcttccaagatttcaaatctgattcctgaataaccttggaggagtgtgttgattctcactagcatggcagctcttgttgctgt |
236 |
Q |
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| | ||| || ||||| |||||||||||||||||||| || || ||||| ||||| || || |||||||| ||||| ||||| ||||||||||||||||| |
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| T |
28185202 |
tcaagagctttgtgatagcttccaagatttcaaatctaataccagaatacccttgaagaagagtgttgatcctcacaagcattgcagctcttgttgctgt |
28185301 |
T |
|
| Q |
237 |
gtgtggaagtgtgtggcttgactcagttccgtttccaaatattccagcattcaaaaa |
293 |
Q |
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||||| ||||| |||| || || || || ||||||||||| ||||||||||| |
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| T |
28185302 |
atgtggtagtgtacaatttgattctgtaccattgccaaatattccggcattcaaaaa |
28185358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 42610605 - 42610688
Alignment:
| Q |
154 |
gcttccaagatttcaaatctgattcctgaataaccttggaggagtgtgttgattctcactagcatggcagctcttgttgctgtg |
237 |
Q |
| |
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||||||| |||||||||||||||||||||||| ||||| || | |||||||||||| || | |||| | |||||||| |||||| |
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| T |
42610605 |
gcttccatgatttcaaatctgattcctgaatatccttgaagcaatgtgttgattctaaccaacatgcctgctcttgtggctgtg |
42610688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 298
Target Start/End: Complemental strand, 40548956 - 40548770
Alignment:
| Q |
112 |
ggtaaacatggagtgacgttgttgttaaggagattggtgatggcttccaagatttcaaatctgattcctgaataaccttggaggagtgtgttgattctca |
211 |
Q |
| |
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||||||||||| || | ||||| ||| || || || || |||||||| | |||||| ||||||||||||| || ||||| ||||||||||||||||| | |
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| T |
40548956 |
ggtaaacatggtgtaatgttgtggttgagaagttttgtaatggcttctagcatttcatatctgattcctgagtagccttgaaggagtgtgttgattctta |
40548857 |
T |
|
| Q |
212 |
ctagcatggcagctcttgttgctgtgtgtggaagtgtgtggcttgactcagttccgtttccaaatattccagcattcaaaaatctgt |
298 |
Q |
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||| ||| |||||||||||||| | ||||| | ||| |||| | || ||||| || ||||| ||||||||||||||||| |||| |
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| T |
40548856 |
ctaacattgcagctcttgttgcattttgtggcaatgtatggcattgttctgttccattaccaaaaattccagcattcaaaaacctgt |
40548770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 43215965 - 43215871
Alignment:
| Q |
139 |
aggagattggtgatggcttccaagatttcaaatctgattcctgaataaccttggaggagtgtgttgattctcactagcatggcagctcttgttgc |
233 |
Q |
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||||| |||||||| ||||| |||||||||||||| || |||||||| ||||| || || || || | ||||| ||||| || ||||||||||| |
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| T |
43215965 |
aggagcttggtgatagcttctaagatttcaaatctaatgcctgaatagccttgtagaagggtattaaccctcacaagcatagctgctcttgttgc |
43215871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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