View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4266_low_19 (Length: 320)
Name: NF4266_low_19
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 66 - 299
Target Start/End: Complemental strand, 26838807 - 26838574
Alignment:
| Q |
66 |
acataaacgcaattgtttcttttgtcattggcctattgcaaatcaattttagaagtaattccttaatattccttcacttcaatcagatccaaaattgata |
165 |
Q |
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| T |
26838807 |
acataaacgcaattgtttcttttgtcattggcctattgcaaatcaattttagtagtaattccttaatattccttcacttcaatcagatccaaaattgata |
26838708 |
T |
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| Q |
166 |
tatgtgtgaagtcaacaaacctcagatccattccccctcaacagttttatgaaatcataacaattggtcaaatgactcaagttgctcatcatatatatgt |
265 |
Q |
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| T |
26838707 |
tatgtgtgaagtcaacaaacctcagatccatttcccctcaacagttttatgaaatcataacaattggtcaaatgactcaagttgttcatcatatatatgt |
26838608 |
T |
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| Q |
266 |
tccaggagggcaattgttgcttaaagacaagaga |
299 |
Q |
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| T |
26838607 |
tccaggagggcaattgttgcttaaagacaagaga |
26838574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 26838892 - 26838834
Alignment:
| Q |
11 |
cacagacattatgcacacagttgacgtagcaaccaaaacaaagcaaaagagtacaacat |
69 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26838892 |
cacagacattatgcacacagttgacgtagcaaccaaaacaaagcaaaagagtacaacat |
26838834 |
T |
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