View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4266_low_22 (Length: 300)
Name: NF4266_low_22
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 5699460 - 5699177
Alignment:
| Q |
1 |
tttcacatattgaacatattatctggtcctaccatgatttcta-taatatttatcctatctatttatttattgtgatcctatctctcactctctcaaata |
99 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5699460 |
tttcacatattgaacacattatctggtcctaccatgatttctaataatatttatcctatctatctatttattgtgatcctatctctcactctctcaaata |
5699361 |
T |
|
| Q |
100 |
atctccaatagtttgtcctttaggacaaacaaacactagtaaattaattaacgtaagaaaatgagtacaagaatactataatgttttttcattgaaaaga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5699360 |
atctccaatagtttgtcctttaggacaaacaaacactagtaaattaattaacgtaagaaaatgagtacaagaatactataatgttttttcattgaaaaga |
5699261 |
T |
|
| Q |
200 |
cactgcaattggacttcttacaacatgatatttgtcggtccaaatataccatccaaaaaagtaattctcaggatcacacttact |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5699260 |
cactgcaattggacttcttacaacatgatatttgtcggtccaaatataccatccaaaaaagtaattctcaggatcacacttact |
5699177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 153 - 283
Target Start/End: Complemental strand, 5687102 - 5686972
Alignment:
| Q |
153 |
taagaaaatgagtacaagaatactataatgttttttcattgaaaagacactgcaattggacttcttacaacatgatatttgtcggtccaaatataccatc |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5687102 |
taagaaaatgagtacaagaatactataatgttttttcattgaaaagacactgcaattggacttcttacaacatgataattgtcggtccaaatataccatc |
5687003 |
T |
|
| Q |
253 |
caaaaaagtaattctcaggatcacacttact |
283 |
Q |
| |
|
||||| |||| || ||||||||||||||||| |
|
|
| T |
5687002 |
caaaatagtatttatcaggatcacacttact |
5686972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University