View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4266_low_26 (Length: 287)
Name: NF4266_low_26
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 44837946 - 44837691
Alignment:
| Q |
15 |
atgaagaaagtgagttaattgagaagatgggttcnnnnnnngcacttatgtgtcatcaaaaacttccttttaatcaagttatgcaatttactggaataca |
114 |
Q |
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| T |
44837946 |
atgaagaaagtgagttaattgagaagatgggttcaaaaaaagcacttatgtgtcatcaaaaacttccttttaatcaagttatgcaatttactggaataca |
44837847 |
T |
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| Q |
115 |
agctatagttgaacatcttaagtttgagactaaaattcatctaatagattttgatataaaaagtggggtccagtgcatagctttgatgcaagcactttct |
214 |
Q |
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| T |
44837846 |
agctatagttgaacatgttaagtttgagactaaaattcatctaatagattttgatataaaaagtggggtccagtgcatagctttgatgcaagcactttct |
44837747 |
T |
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| Q |
215 |
gagagacaagattgcatagttgaaatttttaagctaagtactattggacttaatac |
270 |
Q |
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| T |
44837746 |
gagagacaggattgcatagttgaaatttttaagctaagtgctattggacttaatac |
44837691 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 38927372 - 38927307
Alignment:
| Q |
65 |
tgtcatcaaaaacttccttttaatcaagttatgcaatttactggaatacaagctatagttgaacat |
130 |
Q |
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| T |
38927372 |
tgtcatcaaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacat |
38927307 |
T |
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