View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4266_low_32 (Length: 250)
Name: NF4266_low_32
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 2287609 - 2287786
Alignment:
| Q |
1 |
ttgcttaagaaagggtcctcatacaaataatatttgcttgaaatagcaatggctatgaatctatccacttggccaacaagatccaagggtgcacaagctt |
100 |
Q |
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| T |
2287609 |
ttgcttaagaaagggtcctcatacgaataatatttgcttgaaata---atcactatgaatctatccacttggccaacaagatccaagggtgcacaagctt |
2287705 |
T |
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| Q |
101 |
cgtgaaatgatcgggacattttttgtcactggaaatagcactactcttgattaattcgactatgagcctcacctcggctat |
181 |
Q |
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| T |
2287706 |
cgtgaaatgatcgggacattttttgtcgctggaaatagcactactcttgattaattcgactatgagcctcacctcggctat |
2287786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 2287785 - 2287875
Alignment:
| Q |
150 |
attaattcgactatgagcctcacctcggctatgaacgagaaaatgtatgttatcaattctactataaaaaatggcgtcgttacctcctttg |
240 |
Q |
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| T |
2287785 |
attaattcgactatgagcctcacctcggctatgaacgagaaaatgtatgttatcaattctactataaaaaatggcctcgttacctcctttg |
2287875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 2044177 - 2044103
Alignment:
| Q |
1 |
ttgcttaagaaagggtcctcatacaaataatatttgcttgaaatagcaatggctatgaatctatccacttggcca |
75 |
Q |
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| T |
2044177 |
ttgcttaagaaagggtcctcatacaaataatatttgcttgaaatagcaatggctatgaatctatccacttggcca |
2044103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 2262634 - 2262732
Alignment:
| Q |
147 |
ttgattaattcgactatgagcctcacctcgg-ctatgaacgagaaaatgtatgttatcaattctactat-----aaaaaatggcgtcgttacctcctttg |
240 |
Q |
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| T |
2262634 |
ttgattaattcgactatgagcctctcctcggcctatgaacgtg-aaatgtatgtcatcaattcgactataaaaaaaaaaatggcgtcgttacctcctttg |
2262732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 30302965 - 30302893
Alignment:
| Q |
75 |
aacaagatccaagggtgcacaagcttcgtgaaatgatcgggaca-ttttttgtcactggaaatagcactactc |
146 |
Q |
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| T |
30302965 |
aacatgatccaatggtgcacagacatcgtgaaaagctcgggacagttttttgtcgctgggaatagcactactc |
30302893 |
T |
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