View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4266_low_37 (Length: 238)
Name: NF4266_low_37
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266_low_37 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 32592453 - 32592670
Alignment:
| Q |
18 |
gtctgaccaagtccattttgcaacatataactctcaactttggttacattgttgtttcctaataaaggagcagctgaagatgatggaacacttgcaataa |
117 |
Q |
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| T |
32592453 |
gtctgaccaagtccattttgcaacatataactctcaactttggttacattgttgtttcctaataaaggagcagctgaagatgatggaacacatgcaataa |
32592552 |
T |
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| Q |
118 |
tattcagcaacacgaggatacaaaatgcaagcaccatcaatttagtcattgctctaattatttgaacttccaatgaacctatggatgatgactaatattg |
217 |
Q |
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| T |
32592553 |
tattcagcaacacgaggatacaaaatgcaagcaccatcaatttagtcattgctctaattatttgaacttccaatgaacctatggatgatg---aatattg |
32592649 |
T |
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| Q |
218 |
cataaccttatagtggtatat |
238 |
Q |
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| T |
32592650 |
cataaccttagagtggtatat |
32592670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 32602595 - 32602825
Alignment:
| Q |
18 |
gtctgaccaagtccattttgcaacatataactctcaactttggttacattgt---tgtttcctaataaaggagcagctgaagatgatggaacacttgcaa |
114 |
Q |
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| T |
32602595 |
gtctgaccaagtccattttgcaacatataactcttaattttggttacattgttgttgtttcctaataatcgagcagctgaagatgatggaacacttgcaa |
32602694 |
T |
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| Q |
115 |
taatattcagcaacacgaggatacaaaatgcaagcaccatcaatttagtcattgctctaattatttgaacttccaatgaacctatggat-------gatg |
207 |
Q |
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| T |
32602695 |
taatattcagcaacatgaggatacaaaatgcaagcaccatcaatctagccattgctctaattatttgaacttccaatgaacctatgaataatgaaggatg |
32602794 |
T |
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| Q |
208 |
actaatattgcataaccttatagtggtatat |
238 |
Q |
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| T |
32602795 |
atgaatattgcataactttatagtggtatat |
32602825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 35125149 - 35125273
Alignment:
| Q |
68 |
gttgtttcctaataaaggagcagctgaagatgatggaacacttgcaataatattcagcaacacgaggatacaaaatgcaagcaccatcaatttagtcatt |
167 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | ||| ||||| |||| |||||||||||| ||| |||| |
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| T |
35125149 |
gttggttcctaataaacgagcagctgaagatgatggaacacttgcaata---ttcactagcactaggatgtaaaacacaagcaccatcaccctagccatt |
35125245 |
T |
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| Q |
168 |
gctctaattatttgaacttccaatgaac |
195 |
Q |
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| T |
35125246 |
gctctaattatttgcacttccaatgaac |
35125273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 34581190 - 34581233
Alignment:
| Q |
73 |
ttcctaataaaggagcagctgaagatgatggaacacttgcaata |
116 |
Q |
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| T |
34581190 |
ttcctaataaacgagcagctgtagatgatggaatacttgcaata |
34581233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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