View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4266_low_39 (Length: 236)

Name: NF4266_low_39
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4266_low_39
NF4266_low_39
[»] chr5 (2 HSPs)
chr5 (1-214)||(28532766-28532979)
chr5 (120-165)||(41900503-41900548)
[»] chr4 (2 HSPs)
chr4 (108-167)||(553759-553818)
chr4 (112-167)||(21833278-21833333)
[»] chr6 (11 HSPs)
chr6 (109-167)||(6593929-6593987)
chr6 (109-165)||(6423907-6423963)
chr6 (110-163)||(6410699-6410752)
chr6 (19-79)||(6588181-6588241)
chr6 (109-163)||(19633104-19633158)
chr6 (186-223)||(6417021-6417058)
chr6 (110-167)||(6417092-6417149)
chr6 (117-166)||(6596241-6596290)
chr6 (108-149)||(7132323-7132364)
chr6 (108-149)||(7135246-7135287)
chr6 (108-149)||(7138169-7138210)
[»] chr3 (2 HSPs)
chr3 (109-167)||(51763388-51763446)
chr3 (109-166)||(51113195-51113252)
[»] chr7 (5 HSPs)
chr7 (108-167)||(10615713-10615772)
chr7 (108-168)||(10169047-10169107)
chr7 (108-168)||(10176572-10176632)
chr7 (183-220)||(10169137-10169174)
chr7 (183-220)||(10176662-10176699)
[»] chr8 (2 HSPs)
chr8 (122-166)||(32151969-32152013)
chr8 (110-158)||(34935986-34936034)
[»] chr1 (2 HSPs)
chr1 (103-167)||(7555198-7555262)
chr1 (108-165)||(19467428-19467485)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 28532979 - 28532766
Alignment:
Q  1 ctcgctatctcggtcacaacctcgacgaccttctctgccaaatctctcgtttctcgtcgttcaaattcacttcactcaaactcccaaacgttggtaaccg 100  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||   |||| |||| |||||| ||| |||||||||||| |||||||||||||||||    
T  28532979 ctcgctatctaggtaacaacctcgacgaccttctctgccaaatctcagatttcccgtcattcaaaatcatttcactcaaacttccaaacgttggtaaccg 28532880  T
Q  101 cttcccagcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttccggctttgttaacctatttcttatcgcagaatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532879 cttcccagcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttccggctttgttaacctatttcttatcgcagaatgt 28532780  T
Q  201 ttccctttgctcga 214  Q
    ||||||||||||||    
T  28532779 ttccctttgctcga 28532766  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 41900503 - 41900548
Alignment:
Q  120 cgagctttttcacaaaacattacaactttgacctctttcacttgtt 165  Q
    |||||||||||  |||| |||||||||||||||||| |||||||||    
T  41900503 cgagctttttccaaaaagattacaactttgacctctctcacttgtt 41900548  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 553818 - 553759
Alignment:
Q  108 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 167  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||| |||| ||||||    
T  553818 gcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctcacctgttcc 553759  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 21833278 - 21833333
Alignment:
Q  112 atggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 167  Q
    |||| ||||||| |||| ||||||||||||| |||||||||||| |||||||||||    
T  21833278 atgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttcc 21833333  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 6593929 - 6593987
Alignment:
Q  109 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 167  Q
    ||||||| ||||||| ||| |||||||| |||||||||||||||||||||| |||||||    
T  6593929 caaatggtttgcgagttttctcacaaaagattacaactttgacctctttcaattgttcc 6593987  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 6423963 - 6423907
Alignment:
Q  109 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgtt 165  Q
    ||||||| ||||||||||| || |||||||| ||||||||||||||| |||||||||    
T  6423963 caaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 6410752 - 6410699
Alignment:
Q  110 aaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttg 163  Q
    |||||| |||| || ||| || ||||||||||||||||||||||||||||||||    
T  6410752 aaatgggttgcaagttttctcccaaaacattacaactttgacctctttcacttg 6410699  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 6588181 - 6588241
Alignment:
Q  19 acctcgacgaccttctctgccaaatctctcgtttctcgtcgttcaaattcacttcactcaa 79  Q
    |||||||||||||||| |||||||||||||||||| |  | || ||| |||||||||||||    
T  6588181 acctcgacgaccttctttgccaaatctctcgtttcccaacattgaaaatcacttcactcaa 6588241  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 19633158 - 19633104
Alignment:
Q  109 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttg 163  Q
    ||||||| ||||||||||| ||  ||| ||||||||||||||||||| |||||||    
T  19633158 caaatgggttgcgagctttctccgaaagcattacaactttgacctctctcacttg 19633104  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 6417058 - 6417021
Alignment:
Q  186 cttatcgcagaatgtttccctttgctcgaagaacttga 223  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  6417058 cttattgcagaatgtttccctttgcttgaagaacttga 6417021  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 6417149 - 6417092
Alignment:
Q  110 aaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 167  Q
    |||||| || |||||||| || ||||| | |||||||||||||||| |||||||||||    
T  6417149 aaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcc 6417092  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 6596241 - 6596290
Alignment:
Q  117 ttgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 166  Q
    ||||||| ||| || |||||||| ||||||||||||||| ||||||||||    
T  6596241 ttgcgagttttctcccaaaacataacaactttgacctctctcacttgttc 6596290  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 7132364 - 7132323
Alignment:
Q  108 gcaaatggattgcgagctttttcacaaaacattacaactttg 149  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7132364 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7132323  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 7135287 - 7135246
Alignment:
Q  108 gcaaatggattgcgagctttttcacaaaacattacaactttg 149  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7135287 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7135246  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 7138210 - 7138169
Alignment:
Q  108 gcaaatggattgcgagctttttcacaaaacattacaactttg 149  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  7138210 gcaaatgggttgcgagctttctcccaaaacattacaactttg 7138169  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 51763388 - 51763446
Alignment:
Q  109 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 167  Q
    ||||||| ||||||| |||||||||||| |||||||||||||| ||| |||||||||||    
T  51763388 caaatgggttgcgagttttttcacaaaagattacaactttgacatctctcacttgttcc 51763446  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 51113195 - 51113252
Alignment:
Q  109 caaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttc 166  Q
    ||||||||||||||||||| ||  |||| ||||||||| |||||||| ||||||||||    
T  51113195 caaatggattgcgagctttctcggaaaatattacaactctgacctctctcacttgttc 51113252  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 10615772 - 10615713
Alignment:
Q  108 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 167  Q
    |||||||| || |||||||| || ||||| |||||||||||||||||| |||||||||||    
T  10615772 gcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgttcc 10615713  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 10169047 - 10169107
Alignment:
Q  108 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttccg 168  Q
    |||||||| ||||||| ||| || ||||| |||| ||||||||||||| ||||||||||||    
T  10169047 gcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccg 10169107  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 10176572 - 10176632
Alignment:
Q  108 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttccg 168  Q
    |||||||| ||||||| ||| || ||||| |||| ||||||||||||| ||||||||||||    
T  10176572 gcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccg 10176632  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 10169137 - 10169174
Alignment:
Q  183 tttcttatcgcagaatgtttccctttgctcgaagaact 220  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  10169137 tttcttatcgcagaatgttttcctttgcttgaagaact 10169174  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 10176662 - 10176699
Alignment:
Q  183 tttcttatcgcagaatgtttccctttgctcgaagaact 220  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  10176662 tttcttatcgcagaatgttttcctttgcttgaagaact 10176699  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 32152013 - 32151969
Alignment:
Q  122 agctttttcacaaaacattacaactttgacctctttcacttgttc 166  Q
    |||||| || |||||||||||||||||||||||| ||||||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgttc 32151969  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 34935986 - 34936034
Alignment:
Q  110 aaatggattgcgagctttttcacaaaacattacaactttgacctctttc 158  Q
    |||||| ||||||| ||| |||||||| |||||||||||||| ||||||    
T  34935986 aaatggtttgcgagttttctcacaaaatattacaactttgacatctttc 34936034  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 7555262 - 7555198
Alignment:
Q  103 tcccagcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgttcc 167  Q
    |||| |||| ||||||||||||||| || ||||| ||||||||||| |||||  |||||||||||    
T  7555262 tccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttcc 7555198  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 19467428 - 19467485
Alignment:
Q  108 gcaaatggattgcgagctttttcacaaaacattacaactttgacctctttcacttgtt 165  Q
    |||||||| ||||||| |||  | ||||| |||||||||||||||||| |||||||||    
T  19467428 gcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgtt 19467485  T

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