View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4266_low_4 (Length: 687)
Name: NF4266_low_4
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 34148463 - 34147994
Alignment:
| Q |
1 |
ggctgattattgagattggtggtgtgaaatccttaataggatgtttacatggaattgcactaatgcgtaaactgaaaaagaatgatttgaatttaaccaa |
100 |
Q |
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| T |
34148463 |
ggctgattattgagattggtggtgtgaaatccttaataggatgtttacatggaattgcactaatgcgtaaactgaaaaagaatgatttgaatttaaccaa |
34148364 |
T |
|
| Q |
101 |
tgaaataaattcagaagaagaacaaaatccttgtcctagaccagatggattaccaaaatctgctgatgaaatgatggaagaggagcaagcaaaaatgcct |
200 |
Q |
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| T |
34148363 |
tgaaatatattcagaagaagaacaaaatccttgtcctagaccagatggattaccaaaatctgctgatgaaatgatggaagaggagcaagcaaaaatgcct |
34148264 |
T |
|
| Q |
201 |
gattcatcgtatactaaacttcttagatccatgggaaagtcacctgcatggtattctgaagcaccagatcatgaaacagattgatgattttgtttcagtt |
300 |
Q |
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| T |
34148263 |
gattcatcatatactaaacttcttagatccatgggaaagtcacctgcatggtattctgaagcaccagatcatgaaacagattgatgattttgtttcagtt |
34148164 |
T |
|
| Q |
301 |
tatagggagggattaatgatgtgaatgtgttagtcgtaggctagttatggatatgaatgaattatggaatagctgtataattg-ag------ttctttct |
393 |
Q |
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| T |
34148163 |
tatagggagggattaatgatgtgaatgtgttagtcgtaggctagttatggatatgaatgaattatggaatagctgtataattgtagttttttttctttct |
34148064 |
T |
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| Q |
394 |
ttctttcactttggttattgcttttcataaaatccctatctcatgtaatttcaggaagtaatgtacaggt |
463 |
Q |
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| T |
34148063 |
ttctttcactttggttattgcttttcataaaatccctatctcatgtaatttcaggaagtaatgtacaggt |
34147994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 534 - 669
Target Start/End: Complemental strand, 34147935 - 34147800
Alignment:
| Q |
534 |
gtaacaattcttaggtcgagttttctaagagagcggtaaatatggttgtctataactttactaaggtggctatataacgtgtgttctttctccctaattc |
633 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34147935 |
gtaataattcttaggtcgagttttctaagagagcggtaaatatggttgtctataactttactaaggtggctatataatgtgtgttctttctccctaattc |
34147836 |
T |
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| Q |
634 |
ggaaatttgagaaatgaattatggttgtactctatt |
669 |
Q |
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| T |
34147835 |
ggaaatttgagaaatgaattatggttgtactctatt |
34147800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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