View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4266_low_40 (Length: 229)

Name: NF4266_low_40
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4266_low_40
NF4266_low_40
[»] chr4 (8 HSPs)
chr4 (1-212)||(46428328-46428534)
chr4 (100-212)||(46015966-46016078)
chr4 (100-196)||(46020880-46020976)
chr4 (153-212)||(46028010-46028069)
chr4 (1-67)||(46020990-46021056)
chr4 (153-211)||(46020653-46020710)
chr4 (152-196)||(46015435-46015479)
chr4 (153-197)||(46246223-46246267)
[»] chr8 (2 HSPs)
chr8 (153-211)||(4522907-4522964)
chr8 (153-211)||(4525280-4525337)
[»] chr1 (2 HSPs)
chr1 (100-195)||(50668577-50668681)
chr1 (153-196)||(3802619-3802662)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 46428534 - 46428328
Alignment:
Q  1 gttattttaatatggctgaaactgttaaagagaaaaggagaagaaaaaagacaacgcacaacagccacagaaaaatagaagacatgcataggaaaaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428534 gttattttaatatggctgaaactgttaaagagaaaaggagaagaaaaaagacaacgcacaacagccacagaaaaatagaagacatgcataggaaaaaata 46428435  T
Q  101 gaatgaaatgggttgaatttcccaagcctggcaacaatggcaagataaacacatgtccatattaacactcaatca---agaacttgcattttcataaaaa 197  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||   ||||||||||||||||||||||    
T  46428434 gaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacacatgtc--------cactcaatcaattagaacttgcattttcataaaaa 46428343  T
Q  198 caggaaagcaaaaat 212  Q
    |||||||||||||||    
T  46428342 caggaaagcaaaaat 46428328  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 46016078 - 46015966
Alignment:
Q  100 agaatgaaatgggttgaatttcccaagcctggcaacaatggcaagataaacacatgtccatattaacactcaatcaagaacttgcattttcataaaaaca 199  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||    
T  46016078 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacatatgtgtatattaacactcaatcaagaacttgcattttcataaaaaca 46015979  T
Q  200 ggaaagcaaaaat 212  Q
    |||||||||||||    
T  46015978 ggaaagcaaaaat 46015966  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 46020976 - 46020880
Alignment:
Q  100 agaatgaaatgggttgaatttcccaagcctggcaacaatggcaagataaacacatgtccatattaacactcaatcaagaacttgcattttcataaaa 196  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||||||| ||| |||| ||| |||||||||||||||||||||| ||||||||||||    
T  46020976 agaatgaaatgggctgaatttcccaagtctggcaacaacggcaagatagacatatgtgcattttaacactcaatcaagaacttggattttcataaaa 46020880  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 46028069 - 46028010
Alignment:
Q  153 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaat 212  Q
    |||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  46028069 atgtgcatattaacactcaaacaagaacttgcatcttcataaaaacaggaaagcaaaaat 46028010  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 46021056 - 46020990
Alignment:
Q  1 gttattttaatatggctgaaactgttaaagagaaaaggagaagaaaaaagacaacgcacaacagcca 67  Q
    ||||||||||||||||||||| ||||||| |||||   |||| |||||||||||| |||||||||||    
T  46021056 gttattttaatatggctgaaagtgttaaaaagaaagaaagaaaaaaaaagacaacacacaacagcca 46020990  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 46020710 - 46020653
Alignment:
Q  153 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaa 211  Q
    |||| |||||||||||||||||||||  ||||||||||||||||| |||||| ||||||    
T  46020710 atgtgcatattaacactcaatcaagaggttgcattttcataaaaa-aggaaaacaaaaa 46020653  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 46015479 - 46015435
Alignment:
Q  152 catgtccatattaacactcaatcaagaacttgcattttcataaaa 196  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||    
T  46015479 catgtgcatattaacactcaatcaagaggttgcattttcataaaa 46015435  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 46246223 - 46246267
Alignment:
Q  153 atgtccatattaacactcaatcaagaacttgcattttcataaaaa 197  Q
    |||| |||||||||| ||||||||||  |||||||||||||||||    
T  46246223 atgtgcatattaacattcaatcaagaggttgcattttcataaaaa 46246267  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 4522907 - 4522964
Alignment:
Q  153 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaa 211  Q
    |||| ||| ||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  4522907 atgtgcattttaacactcaatcaagagcttgaattttcat-aaaacaggaaagcaaaaa 4522964  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 4525280 - 4525337
Alignment:
Q  153 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaa 211  Q
    |||| ||||||||||||||||||||| ||||  ||||||| |||||| |||||||||||    
T  4525280 atgtgcatattaacactcaatcaagagcttgatttttcat-aaaacaagaaagcaaaaa 4525337  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 50668681 - 50668577
Alignment:
Q  100 agaatgaaatgggttgaatttcccaagcctggcaacaatggcaagataaacaca---------tgtccatattaacactcaatcaagaacttgcattttc 190  Q
    ||||||||||||| | ||||| ||||| ||| ||||||| |||||||||||| |         ||| ||||||||||||| ||||||| |||||||||||    
T  50668681 agaatgaaatgggctcaattttccaagtctgacaacaatagcaagataaacataaccaacttatgtgcatattaacactcgatcaagagcttgcattttc 50668582  T
Q  191 ataaa 195  Q
    |||||    
T  50668581 ataaa 50668577  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 3802619 - 3802662
Alignment:
Q  153 atgtccatattaacactcaatcaagaacttgcattttcataaaa 196  Q
    |||| |||||||||||||||||||||  ||||||||||||||||    
T  3802619 atgtgcatattaacactcaatcaagaggttgcattttcataaaa 3802662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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