View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4266_low_43 (Length: 220)
Name: NF4266_low_43
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266_low_43 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 4861330 - 4861518
Alignment:
| Q |
16 |
attatacttataactcatttcacatataatgtgtttaacaatcannnnnnncttctaacgtgggactcttactcaattgatataccaatacttttaacac |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4861330 |
attatacttataagtcatttcacatataatgtgtttaacaatcatttttttcttctaacgtgagactcttactcaattgatatacaaatacttttaacac |
4861429 |
T |
|
| Q |
116 |
taatatgaaagttttgtctatatcttttgttgtgtttcctctacccatctcttgtccgtacgtctcgtttttctttctctttcatatat |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4861430 |
taatatgaaagttttgtctatatcttttgttgtgtttcctctacccatctcttgtccgtacgtctcgtttttctttctctttcatatat |
4861518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University