View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4266_low_6 (Length: 568)
Name: NF4266_low_6
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 46 - 397
Target Start/End: Complemental strand, 43692257 - 43691892
Alignment:
| Q |
46 |
agtagagtttggagacacggagcataaacaatctattgttgagaagtttgagacatttacatggaatgttgagaatttctctcgctggaacggggggact |
145 |
Q |
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| T |
43692257 |
agtagagtttggagacacggagcataaacaatctattgttgagaagtttgagacatttacatggaatgttgagaatttctctcgctggaacggggggact |
43692158 |
T |
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| Q |
146 |
tactctgagccttttgtgctaggtggctatccatggtatgctatttgtatgaataaattctcacatgttagaatttagtgatctgattttgcttttgctt |
245 |
Q |
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| T |
43692157 |
tactctgagccttttgtgctaggtggctatccatggtatgctatttgtatgaataaattctcacatgttagaatttagtgatctgattttgcttttgctt |
43692058 |
T |
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| Q |
246 |
taggaagatacttcttatcaatggggtgacaatgtaggcgac--------------gagtgttgtggaaactgctaacatgtctaaaggatggagcagac |
331 |
Q |
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| T |
43692057 |
taggaagatacttcttatcaatggggtgacaatgtaggcgacttatcaatttttttgagtgttgtggaaactgctaacatgtctaaaggatggagcagac |
43691958 |
T |
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| Q |
332 |
atgtgaaatttaagttgtttgtacttaaccaggtcgacagcaacaggacaatcttctctgatggta |
397 |
Q |
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| T |
43691957 |
atgtgaaatttaagttgtttgtacttaaccaggtcgacagcaacaggacaatcttctctgatggta |
43691892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 467 - 551
Target Start/End: Complemental strand, 43691822 - 43691738
Alignment:
| Q |
467 |
acacaaatcaagaaaataaatatataagttagaagatttttcctttagagtagtttaattgactcttgattcatgctttttccca |
551 |
Q |
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| T |
43691822 |
acacaaatcaagaaaataaatatataagttagaagatttttcctttagagtagtttaattgactcttgattcatgctttttccca |
43691738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 43693846 - 43693774
Alignment:
| Q |
64 |
ggagcataaacaatctattgttgagaagtttgagacatttacatggaatgttgagaatttctctcgctggaac |
136 |
Q |
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| T |
43693846 |
ggagcataaacactctagtgttgagaagtttgaaacattcacgtggaaggttgagaacttctcttgcttgaac |
43693774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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