View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4266_low_7 (Length: 533)
Name: NF4266_low_7
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 36509903 - 36510415
Alignment:
| Q |
1 |
caataaggaacgaccataaaattattttagaagtaaataaaatttctcaaaagtcaagcgtatttgaagcacccacaatatcatacaaaaattacaagga |
100 |
Q |
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| T |
36509903 |
caataaggaacgaccataaaattattttagaagtaaataaaatttctcaaaagtcaagcgtatttgaagcacccacaatatcatacaaaaattacaagga |
36510002 |
T |
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| Q |
101 |
aaagctacaaaaatatttcaaagtaaacaaaatgaggggatttggattcacggctgtcaattaaaacatgcagtcatgctgtcaatttaatatcaatcgt |
200 |
Q |
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| T |
36510003 |
aaagctacaaaaatatttcaaagtaaacaaaatgaggggatttggattcacggctgtcaattaaaacatgcagtcatgctgtcaatttaatatcaatcgt |
36510102 |
T |
|
| Q |
201 |
cggatttaaccaacagttgagatccagcctttccagtataatcactcaaaacacaaagcatcggattgaaaccccacccttcgtatgtcttccactctgt |
300 |
Q |
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| T |
36510103 |
cggatttaaccaacagttgagatccagcctttccagtataatcactcaaaacacaaagcatcggattgaaaccccacccttcgtatgtcttccactc--t |
36510200 |
T |
|
| Q |
301 |
cagttcttcacaacatccaaacataaaactcatgtgcctgttacatccatcccttcttgaatttcagttttcattgttcggtaaattttttattttattt |
400 |
Q |
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| T |
36510201 |
cagttcttcacaacatccaaacataaaactcatgtgcctgttacatccatcccttcttgaatttcagttttcattgttcggtaaattttttattttattt |
36510300 |
T |
|
| Q |
401 |
actggttcaatctcatgaaacagaactaatgaaagaaaagaaaagtcggaaaacagattaaaacaggttaaaattttggtttgttgagaagtgattatgg |
500 |
Q |
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| T |
36510301 |
actggttcaatctcatgaaacagaactaatgaaagaaaagaaaagtcggaaaacagattaaaacaggttaaaattttggtttgttgagaagtgattatgg |
36510400 |
T |
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| Q |
501 |
aggtagctgagaatg |
515 |
Q |
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| T |
36510401 |
aggtagctgagaatg |
36510415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 36510622 - 36510561
Alignment:
| Q |
137 |
gggatttggattcacggctgtcaattaaaacatgcagtcatgctgtcaatttaatatcaatc |
198 |
Q |
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||||||||||||||||||||||| ||||| | |||||||||||||| | ||||| ||||||| |
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| T |
36510622 |
gggatttggattcacggctgtcagttaaatcctgcagtcatgctgtgagtttaacatcaatc |
36510561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 516
Target Start/End: Complemental strand, 42290201 - 42290150
Alignment:
| Q |
465 |
aggttaaaattttggtttgttgagaagtgattatggaggtagctgagaatgt |
516 |
Q |
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||||| ||| ||| || ||||||||||||||||||| ||||||||||||||| |
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| T |
42290201 |
aggttgaaactttcgtctgttgagaagtgattatggcggtagctgagaatgt |
42290150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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