View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4266_low_9 (Length: 411)
Name: NF4266_low_9
Description: NF4266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4266_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 22569958 - 22569566
Alignment:
| Q |
16 |
tgaagcattaaacagtatcaggcatattaattaagcagatttattctttcagagttcagaccctcattatgcagtacttaaattaattaagacacgtcaa |
115 |
Q |
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| T |
22569958 |
tgaagcattaagcagtatcaggcatattaattaagcagatttattctttcaga-------ccctcattatgcagtacttaaattaattaagacacgtcaa |
22569866 |
T |
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| Q |
116 |
cactcattgggtggagaatatcctaaaatgcaactatccaccataacagcct--tatgttattgaggcacttctgttctgaataactagcca-------- |
205 |
Q |
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| T |
22569865 |
cactcattgggtggagaatatcctaaaatgcaactatccaccataacagccttatattttattaaggcacttctgttctgaataaccagccaaattaaaa |
22569766 |
T |
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| Q |
206 |
---------aattaaaaatcaagagctctacaaagtacaaaatatatataaatctaattattatctattttcatttacaacacttactgtnnnnnnnnng |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22569765 |
atcaagagcaattaaaaatcaagagctctacaaagtacaaaatatatataaatctaattattatctattttcatttacaacacttactgtaaaaaaaaag |
22569666 |
T |
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| Q |
297 |
tgaacaacattataagaagactttagtgagttatgcaactaagtacctaaccaacaataataccgttaattagttagttgaactcccatatcatatatat |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22569665 |
tgaacaacattataagaagactttagtgagttatgcaactaagtacctaaccaacaagaataccgttaattagttagttgaactcccatatcatatatat |
22569566 |
T |
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