View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267-Insertion-10 (Length: 52)
Name: NF4267-Insertion-10
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267-Insertion-10 |
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Alignment Details
Target: chr3 (Bit Score: 50; Significance: 1e-20; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-20
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1104018 - 1104067
Alignment:
| Q |
1 |
tttacttgggctattgtccttcgtagtaatccagaaattgtattgaaaaa |
50 |
Q |
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| T |
1104018 |
tttacttgggctattgtccttcgtagtaatccagaaattgtattgaaaaa |
1104067 |
T |
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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 1046991 - 1047036
Alignment:
| Q |
4 |
acttgggctattgtccttcgtagtaatccagaaattgtattgaaaa |
49 |
Q |
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| T |
1046991 |
acttggggtattgtccttcgtagtaatccagaaattgttttgaaaa |
1047036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 1071807 - 1071850
Alignment:
| Q |
7 |
tgggctattgtccttcgtagtaatccagaaattgtattgaaaaa |
50 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
1071807 |
tggggtattgtccttcatagtaatccagaaattgtattgaaaaa |
1071850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 1087465 - 1087511
Alignment:
| Q |
4 |
acttgggctattgtccttcgtagtaatccagaaattgtattgaaaaa |
50 |
Q |
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||||||| |||||||||| |||||||||||||| ||||||||||||| |
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| T |
1087465 |
acttggggtattgtccttagtagtaatccagaagttgtattgaaaaa |
1087511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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