View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267-Insertion-4 (Length: 140)
Name: NF4267-Insertion-4
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267-Insertion-4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 6e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 6e-69
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 2420481 - 2420342
Alignment:
| Q |
1 |
cgtcctacttcacaatttgataaatgtatgagagtgattcattttgtcgacattgtatttgagtaaggggcatatcatggttatcaccaaattcaacatt |
100 |
Q |
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| T |
2420481 |
cgtcctacttcacaatttgataaatgtatgagagtgattcattttgtcgacattgtatttgagtaaggggcatatcatggttatcaccaaattcaacatt |
2420382 |
T |
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| Q |
101 |
ctatgagtcttacaaatgacttgtcaacatgttgttgaat |
140 |
Q |
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| T |
2420381 |
ctatgagtcttacaaataacttgtcaacatgtggttgaat |
2420342 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 25101310 - 25101237
Alignment:
| Q |
58 |
tttgagtaaggggcatatcatggttatcaccaaattcaacattctatgagtcttacaaatgacttgtcaacatg |
131 |
Q |
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| T |
25101310 |
tttgagtaaggagcttactgtggttatcaccaaattcaacattctttcagccttacaaaagacttgtcaacatg |
25101237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 14876292 - 14876233
Alignment:
| Q |
81 |
ttatcaccaaattcaacattctatgagtcttacaaatgacttgtcaacatgttgttgaat |
140 |
Q |
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| T |
14876292 |
ttatcatcaaattcaacattctttcattcttacaaaagacttgtcatcatgtggttgaat |
14876233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 35437267 - 35437228
Alignment:
| Q |
89 |
aaattcaacattctatgagtcttacaaatgacttgtcaac |
128 |
Q |
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| T |
35437267 |
aaattaaacattgtctgagtcttacaaatgacttgtcaac |
35437228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 140
Target Start/End: Original strand, 40111655 - 40111686
Alignment:
| Q |
109 |
cttacaaatgacttgtcaacatgttgttgaat |
140 |
Q |
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| T |
40111655 |
cttacaaatgacttgtcaacatgtagttgaat |
40111686 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 47837595 - 47837521
Alignment:
| Q |
29 |
tgagagtgattcattttgtcgacattgt-atttgagtaaggggcatatcatggttatcaccaaattcaacattct |
102 |
Q |
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| T |
47837595 |
tgagagtgactcattttgtcgatattgtaatttgagtaaggagtgtattgtggttctcatcaaattcaacattct |
47837521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 9645839 - 9645759
Alignment:
| Q |
58 |
tttgagtaaggggcatatcatggttatcaccaaattcaacattctatgagtcttacaaatgacttgtcaacatgttgttga |
138 |
Q |
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| T |
9645839 |
tttgagtaaggaacttattgtggttatgaccaaattcaacattctttcggtcttacagaaaacttgtcaacatgtggttga |
9645759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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