View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267-Insertion-5 (Length: 137)
Name: NF4267-Insertion-5
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267-Insertion-5 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 5e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 31883547 - 31883428
Alignment:
| Q |
18 |
agagtcaagccagagcaaagtatccttaccattctcgacaatcttgaataattcatatgaaaaccaattatttgagtaaaccgccaacttaatctttgat |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31883547 |
agagtcaagcaagagcaaagtatccttaccattctcgacaatcttgaataattcatatgaaaaccaattatttgagtaaaccgccaacttaatctttgat |
31883448 |
T |
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| Q |
118 |
tttgtagaacgcattcaaat |
137 |
Q |
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| T |
31883447 |
tttgtagaacacattcaaat |
31883428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 31888998 - 31888880
Alignment:
| Q |
18 |
agagtcaagccagagcaaagtatccttaccattctcgacaatcttgaataattcatatgaaaaccaattatttgagtaaaccgccaacttaatctttgat |
117 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31888998 |
agagtcaagcaagagcaaagtatccttaccattctcgacaatcttgaacaattcatatgaaaaccaattatttgagtaaaccgccaacttaatctttaat |
31888899 |
T |
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| Q |
118 |
tttgtagaacgcattcaaa |
136 |
Q |
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|||||||||| | |||||| |
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| T |
31888898 |
tttgtagaacactttcaaa |
31888880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31883596 - 31883548
Alignment:
| Q |
1 |
agacttccatctacccaagagtcaagccagagcaaagtatccttaccat |
49 |
Q |
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| T |
31883596 |
agacttccatctacccaagagtcaagccagagcaaagtatccttgccat |
31883548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31889047 - 31888999
Alignment:
| Q |
1 |
agacttccatctacccaagagtcaagccagagcaaagtatccttaccat |
49 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31889047 |
agacttccatctacccaagagtcaagccagagcaaagtatccttgccat |
31888999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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