View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4267_high_11 (Length: 515)
Name: NF4267_high_11
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 42341138 - 42341634
Alignment:
| Q |
1 |
tagcaaacaggcaagtcttcctcgccaaaattcgttatcgattcctgctcctctctgcaggaaaactgtggaacaagtttggtctgagatacacaaagaa |
100 |
Q |
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| T |
42341138 |
tagcaaacaggcaagtcttcctcgccaaaattcgttatcgattcctgctcctctctgcaggaaaactgtggaacaagtttggtctgagatacacaaagaa |
42341237 |
T |
|
| Q |
101 |
caacagaaccatcacaacatcaacaatgttgctcagaataccgagtctacccctcgacagccgacttttggcgagatgacattggaggatttcttggtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42341238 |
caacagaaccatcacaacatcaacaatgttgctcagaataccgagtctacccctcgacagccgacttttggcgagatgacattggaggatttcttggtta |
42341337 |
T |
|
| Q |
201 |
aagcaggggtagttagggaacaacagtctggtatgccggttgccatagcaccaccacctaccgcagcagcagtgtcatctcaccggcc---gcagcagca |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42341338 |
aagcaggggtagttagggaacaacagtctggtatgccggttgccatagcaccaccacctaccgcagcagcagtgtcatctcaccggccgcagcagcagca |
42341437 |
T |
|
| Q |
298 |
ttacgctgcagtgtatccgaacaacaactctacaatggttcaggctgcttcatttgctattggcggcggcgggaatctaaacgttgttgcgccaccgtac |
397 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42341438 |
ttacgccgcagtgtatccgaacaacaactctacaatggctcaggctgcttcatttgctattggcggcggcgggaatctaaacgttgttgcgccaccgtac |
42341537 |
T |
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| Q |
398 |
caaacggtggcacagggaggtggagcagttggagaaccttcgagttcagggtatgttgggaatggtaagacgagagatagtataggtacggggtatc |
494 |
Q |
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| T |
42341538 |
caaacggtggcacagggaggtggagcagttggagaaccttcgagttcagggtatgttgggaatggtaagacgagagatagtataggtacggggtatc |
42341634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 16811243 - 16811286
Alignment:
| Q |
164 |
acttttggcgagatgacattggaggatttcttggttaaagcagg |
207 |
Q |
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||||| || |||||||||||||||||||||||||| |||||||| |
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| T |
16811243 |
actttaggagagatgacattggaggatttcttggtgaaagcagg |
16811286 |
T |
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