View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4267_high_12 (Length: 484)
Name: NF4267_high_12
Description: NF4267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4267_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 9 - 468
Target Start/End: Original strand, 39054618 - 39055077
Alignment:
| Q |
9 |
gaaatgaagttggctgatgctgatgtctccgaggaagatcaaaataacctacttaaatatttagcgaagaaggaaaccgaatatatgcgtcttcaaaggc |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39054618 |
gaaaagaagttggctgatgctgatgtctccgaggaagatcaaaataacttacttaaatatttagcgaagaaggaaaccgaatatatgcgtcttcaaaggc |
39054717 |
T |
|
| Q |
109 |
ataaaatgggtgttgaggattttgagatgttaactatgattggaaaaggtgcatttggggaggtatatgatgcaatcaactactctttttcagtatataa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39054718 |
ataaaatgggtgttgaggattttgagatgttaactatgattggaaaaggtgcatttggggaggtatatgatgcaatcaactactctttttcagtatataa |
39054817 |
T |
|
| Q |
209 |
ctctttacatgccccatccactaaatgttatacctctactggaattttgaaatttgttgcaggttagagtctgcagggaaaagactacagatcatgtata |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39054818 |
ttctttacatgccccatccactaaatgttatacctctactggaattttgaaatttgttgcaggttagagtctgcagggaaaagactacagatcatgtata |
39054917 |
T |
|
| Q |
309 |
tgcaatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggtttgtagtcatttactttattacattatgttctattgacgagaagctgctgtg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39054918 |
tgcaatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggtttgtagtcatttactttattacattatgttctattgacgagaagctgctgtg |
39055017 |
T |
|
| Q |
409 |
ttgaagataatgaagtcatcacactaatttctatctttgctaattattcaggtagaacat |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39055018 |
ttgaagataatgaagtcatcacactaatttctatctttgctaattattcaggtagaacat |
39055077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 30395462 - 30395297
Alignment:
| Q |
9 |
gaaatgaagttggctgatgctgatgtctccgaggaagatcaaaataacctacttaaatatttagcgaagaaggaaaccgaatatatgcgtcttcaaaggc |
108 |
Q |
| |
|
|||| ||||||||| ||||| || |||||||| ||||||||||| ||| ||||||||| ||||| ||| |||||||||||||||||||| ||||| || |
|
|
| T |
30395462 |
gaaaagaagttggccgatgccgaggtctccgaagaagatcaaaacaacttacttaaatttttagagaaaaaggaaaccgaatatatgcgccttcagagag |
30395363 |
T |
|
| Q |
109 |
ataaaatgggtgttgaggattttgagatgttaactatgattggaaaaggtgcatttggggaggtat |
174 |
Q |
| |
|
|| ||||||||||| ||||||||| | || |||||||||||||||||||||||||||||||||| |
|
|
| T |
30395362 |
ccaagatgggtgttgatgattttgagttattgactatgattggaaaaggtgcatttggggaggtat |
30395297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 368
Target Start/End: Complemental strand, 30394526 - 30394422
Alignment:
| Q |
264 |
gttgcaggttagagtctgcagggaaaagactacagatcatgtatatgcaatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggtttgtagt |
363 |
Q |
| |
|
||||||||| ||||| ||||| || |||||||| ||| |||||| ||||||||||| ||||||||||| ||||||||||| ||||| ||||||| |||| |
|
|
| T |
30394526 |
gttgcaggtcagagtttgcagagagaagactactgattctgtatacgcaatgaaaaaactaaagaaatcagagatgcttcgcagaggacaggtttatagt |
30394427 |
T |
|
| Q |
364 |
cattt |
368 |
Q |
| |
|
||||| |
|
|
| T |
30394426 |
cattt |
30394422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 33638292 - 33638138
Alignment:
| Q |
19 |
tggctgatgctgatgtctccgaggaagatcaaaataacctacttaaatatttagcgaagaaggaaaccgaatatatgcgtcttcaaaggcataaaatggg |
118 |
Q |
| |
|
|||||||| |||| ||||| |||||||| || || ||||| ||||| ||||| | ||| ||||| | ||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
33638292 |
tggctgattctgaagtctctgaggaagagcagaacaacctgcttaagtattttgagaaaaaggagagggaatacatgcgacttcagaggcataagatggg |
33638193 |
T |
|
| Q |
119 |
tgttgaggattttgagatgttaactatgattggaaaaggtgcatttggggaggta |
173 |
Q |
| |
|
| ||| ||||||||| | | || ||||| || || ||||||||||| |||||| |
|
|
| T |
33638192 |
ggctgatgattttgagcttctcaccatgatagggaagggtgcatttggagaggta |
33638138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 356
Target Start/End: Complemental strand, 15871446 - 15871359
Alignment:
| Q |
269 |
aggttagagtctgcagggaaaagactacagatcatgtatatgcaatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggt |
356 |
Q |
| |
|
|||||||| |||| |||| ||||| || | ||| |||||||| ||||| ||||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
15871446 |
aggttagaatctgtcgggagaagacaactggtcaggtatatgccatgaagaagcttcagaaatcagagatgcttcgaagaggacaggt |
15871359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 356
Target Start/End: Complemental strand, 15924306 - 15924219
Alignment:
| Q |
269 |
aggttagagtctgcagggaaaagactacagatcatgtatatgcaatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggt |
356 |
Q |
| |
|
|||||||| ||||| |||| ||| | || | ||| |||||||| ||||| ||||| |||||||| ||||||||||| ||||| ||||| |
|
|
| T |
15924306 |
aggttagaatctgccgggagaaggcaactggtcaggtatatgctatgaagaagcttaagaaatcagagatgcttcgtagaggacaggt |
15924219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 368
Target Start/End: Original strand, 19700217 - 19700295
Alignment:
| Q |
290 |
agactacagatcatgtatatgcaatgaaaaagctaaagaaatcggagatgcttcgaagaggccaggtttgtagtcattt |
368 |
Q |
| |
|
||||||| | ||||||| | ||||||||||||||||||| ||| |||||||||| ||| || |||||| |||||||| |
|
|
| T |
19700217 |
agactactggtcatgtacaagcaatgaaaaagctaaagacatcagagatgcttcatagaagctaggtttacagtcattt |
19700295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University